Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.7e-255 884.8 437 100.0
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.9e-245 852.0 437 96.1
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.6e-242 841.6 437 96.3
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 2.2e-204 715.7 448 79.0
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 4.1e-203 711.4 437 79.6
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 6.8e-198 694.1 441 77.3
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.7e-193 679.5 444 76.1
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 3.9e-193 678.3 442 76.2
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 3.9e-193 678.3 444 75.9
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.5e-192 676.4 444 75.9
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 6.2e-191 671.0 444 74.1
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 8.0e-191 670.6 444 73.9
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 2.0e-189 666.0 447 74.0
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 2.9e-188 662.1 442 75.3
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 1.4e-187 659.8 445 74.4
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.2e-186 656.8 448 72.8
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.2e-186 656.8 444 73.6
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 6.0e-186 654.4 444 71.4
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 1.3e-185 653.3 443 72.0
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 3.0e-185 652.1 440 71.8
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.1e-184 650.2 447 72.3
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 2.1e-183 646.0 440 70.9
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 6.2e-183 644.4 442 71.7
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 8.1e-183 644.0 443 71.3
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.4e-182 643.3 442 71.3
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 1.4e-182 643.3 442 70.8
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.2e-181 640.2 444 71.4
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 9.9e-181 637.1 441 70.3
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.3e-180 636.7 444 71.6
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 6.4e-180 634.4 449 71.9
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 8.3e-180 634.0 444 71.8
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 3.2e-179 632.1 448 70.1
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 4.1e-179 631.7 441 70.1
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 5.4e-179 631.3 439 73.1
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.4e-179 631.3 441 70.5
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 9.2e-179 630.6 441 69.8
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.6e-178 629.8 441 69.8
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 2.1e-178 629.4 449 70.2
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.7e-177 626.3 441 69.6
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.3e-177 625.9 445 70.6
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.1e-176 623.6 445 70.3
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 1.1e-176 623.6 443 70.7
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 3.3e-176 622.1 436 70.9
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 9.5e-176 620.5 436 70.9
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 1.8e-174 616.3 444 69.4
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.4e-174 615.9 445 69.2
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 6.8e-174 614.4 377 79.8
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 5.8e-173 611.3 435 67.8
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 3.8e-172 608.6 434 68.4
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 6.4e-172 607.8 448 66.5
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 6.4e-172 607.8 443 67.9
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.1e-171 607.1 435 68.3
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.1e-171 607.1 424 69.8
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 1.4e-171 606.7 436 67.9
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.4e-171 605.9 452 68.6
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 9.2e-171 604.0 446 67.7
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 1.2e-170 603.6 440 68.6
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 1.2e-170 603.6 440 68.6
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.1e-170 602.8 452 68.1
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 7.8e-170 600.9 442 65.2
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 2.3e-169 599.4 429 68.8
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 5.1e-169 598.2 439 66.1
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.7e-169 597.4 429 71.8
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.7e-169 597.4 429 71.8
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 8.7e-169 597.4 435 66.4
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.9e-168 596.3 434 68.0
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 5.6e-168 594.7 413 69.7
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 7.3e-168 594.3 431 67.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 6.2e-167 591.3 403 73.4
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 8.1e-167 590.9 438 68.3
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 3.1e-166 589.0 429 66.9
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.2e-165 587.0 451 66.5
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 2.0e-165 586.3 442 64.9
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 5.8e-165 584.7 411 70.1
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 6.4e-164 581.3 445 64.7
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 2.4e-163 579.3 411 68.1
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 3.2e-163 578.9 429 69.2
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.2e-162 577.0 456 63.4
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.6e-162 576.6 432 65.7
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 3.3e-160 568.9 435 67.6
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 9.6e-160 567.4 422 65.2
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 2.1e-159 566.2 436 64.2
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 5.3e-158 561.6 365 72.6
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 1.5e-157 560.1 436 64.4
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 2.2e-156 556.2 433 65.4
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.2e-156 556.2 455 63.1
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.1e-155 553.9 428 64.7
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 7.1e-155 551.2 442 64.5
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 7.1e-155 551.2 422 62.8
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 2.1e-154 549.7 435 65.1
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.1e-154 549.7 392 69.6
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 6.0e-154 548.1 440 63.2
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 7.9e-154 547.7 441 65.5
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 7.9e-154 547.7 439 61.5
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 3.0e-153 545.8 436 64.4
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 3.0e-153 545.8 444 63.1
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.5e-152 543.5 448 62.1
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.6e-152 541.6 441 64.9
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 2.8e-151 539.3 443 63.7
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 6.2e-151 538.1 440 62.7
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.8e-150 536.6 434 64.1
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 4.0e-150 535.4 433 63.7
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 4.0e-150 535.4 342 75.4
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 2.0e-149 533.1 439 62.9
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 1.1e-147 527.3 438 62.8
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.4e-147 526.9 438 62.8
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.4e-147 526.9 445 61.6
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.9e-147 526.6 438 63.5
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.9e-147 526.6 438 63.5
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 8.7e-145 517.7 379 66.5
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.1e-144 517.3 442 61.5
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.9e-144 516.5 446 60.8
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 9.6e-144 514.2 449 57.9
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-143 513.8 350 72.0
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.3e-143 513.8 350 70.0
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 2.1e-143 513.1 443 60.7
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 2.8e-143 512.7 440 58.2
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.4e-142 509.6 336 71.1
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 9.0e-142 507.7 411 61.3
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 3.4e-141 505.8 449 57.5
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.3e-140 503.8 357 69.7
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.3e-140 503.8 434 61.5
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 9.0e-134 481.1 319 73.0
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.0e-133 479.9 354 67.8
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 3.1e-126 456.1 437 55.8
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.9e-121 439.1 348 62.1
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 3.8e-116 422.5 356 61.8
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.8e-110 403.7 302 66.6
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.8e-110 403.7 302 66.6
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.0e-108 397.9 375 57.9
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 7.5e-96 355.1 384 49.7
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 7.5e-96 355.1 422 47.2
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 9.5e-83 311.6 232 64.7
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 7.5e-72 275.4 193 68.4
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.6e-69 266.2 244 58.2
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 6.0e-69 265.8 366 44.3
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 2.8e-66 256.9 160 75.6
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.1e-60 236.1 158 70.3
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 5.4e-54 216.1 257 47.5
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 2.6e-40 170.6 142 58.5
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.5e-38 162.9 107 70.1
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 5.8e-32 142.9 138 58.0
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 5.8e-32 142.9 109 69.7
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 6.5e-31 139.4 110 67.3
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 5.7e-27 126.3 99 58.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.1e-14 85.5 51 74.5
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 1.5e-08 65.1 67 49.3


User provided reference genes

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