Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1590.5 775 100.0
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1588.2 775 99.9
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1376.7 774 86.4
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1370.5 773 85.6
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1317.4 807 81.7
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1308.9 793 82.2
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1246.1 776 78.0
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1237.2 769 80.4
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1236.5 773 78.0
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1223.0 786 76.7
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1221.5 777 76.8
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1217.6 776 77.1
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1217.2 777 76.4
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1216.1 776 77.1
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1213.4 777 76.7
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1211.4 776 76.5
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1210.7 775 76.6
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1209.9 775 77.2
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1205.7 775 76.4
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 0.0e+00 1194.1 772 75.3
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1190.3 777 75.8
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1186.4 777 75.9
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1169.1 773 74.1
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1166.0 775 73.2
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1164.4 773 74.0
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1162.9 773 73.4
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1161.7 776 73.2
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1158.3 774 73.3
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1154.0 775 74.3
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1143.6 774 72.7
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1141.3 779 72.7
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1140.2 775 72.6
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1130.2 786 72.5
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1129.0 776 72.6
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1128.6 776 72.2
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1127.5 775 72.8
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1122.8 774 71.7
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1120.9 775 72.3
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1117.8 777 71.7
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 0.0e+00 1117.1 787 71.4
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1117.1 774 71.4
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1117.1 774 71.4
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1117.1 777 71.7
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1117.1 773 73.2
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 0.0e+00 1116.7 741 75.4
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1114.4 776 72.2
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1114.0 776 72.2
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1113.2 774 71.3
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1111.7 781 71.6
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1110.9 776 71.8
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1109.7 777 72.5
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1104.7 776 71.5
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1103.2 776 71.1
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 0.0e+00 1102.8 781 72.3
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1101.3 777 72.2
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1100.5 774 70.4
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1098.2 777 72.1
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 0.0e+00 1094.3 771 70.0
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1093.2 774 69.9
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1092.8 774 69.5
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1087.8 775 69.5
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1078.2 776 70.6
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1078.2 779 70.1
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 0.0e+00 1076.2 775 69.5
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 0.0e+00 1075.1 782 69.1
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.1e-311 1072.0 775 69.3
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 2.7e-311 1071.6 775 68.4
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.4e-310 1069.3 778 68.6
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.4e-310 1069.3 788 69.0
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.0e-310 1067.8 777 70.1
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 5.2e-310 1067.4 778 68.0
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-309 1065.8 774 68.9
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-309 1065.8 775 69.2
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.0e-309 1065.4 803 65.5
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 9.9e-309 1063.1 780 68.5
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.7e-308 1062.4 778 68.4
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.9e-308 1060.8 780 68.7
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.1e-306 1055.4 812 65.8
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 3.5e-306 1054.7 778 67.7
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 3.5e-306 1054.7 784 67.9
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 3.0e-305 1051.6 781 66.8
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 5.1e-305 1050.8 774 67.3
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.1e-304 1049.7 780 66.5
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 3.3e-304 1048.1 774 67.1
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 3.3e-304 1048.1 778 67.4
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 1.1e-302 1043.1 723 72.9
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.4e-301 1037.7 760 68.9
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.2e-299 1031.2 776 68.4
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 5.4e-299 1030.8 777 65.9
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 9.3e-299 1030.0 771 66.0
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.6e-298 1029.2 772 65.7
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.6e-298 1029.2 777 66.2
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.7e-298 1028.5 778 65.9
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 2.7e-298 1028.5 780 64.6
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.0e-297 1026.5 792 65.5
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 1.1e-296 1023.1 783 66.8
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.6e-296 1020.0 776 67.4
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.1e-295 1018.8 746 70.0
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 6.2e-295 1017.3 775 65.4
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 775 65.3
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.8e-294 1015.8 774 65.6
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.4e-294 1015.4 776 66.2
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 3.1e-294 1015.0 775 65.4
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.2e-293 1013.1 765 65.8
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.5e-293 1012.7 776 65.3
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.3e-292 1009.6 776 64.6
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.3e-292 1009.6 779 66.0
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.7e-292 1009.2 778 64.8
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 2.2e-292 1008.8 773 64.8
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.9e-292 1008.4 778 64.9
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.4e-291 1006.1 776 64.6
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.1e-289 997.7 780 64.9
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 7.4e-288 993.8 780 64.5
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.4e-286 988.8 778 63.9
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 2.4e-286 988.8 777 64.1
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 3.1e-286 988.4 776 63.8
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 2.0e-285 985.7 771 63.3
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 2.0e-285 985.7 780 63.6
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 8.4e-284 980.3 755 64.9
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 2.4e-283 978.8 734 71.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 2.1e-282 975.7 780 63.5
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 5.1e-281 971.1 777 64.6
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 6.2e-279 964.1 788 64.7
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 2.5e-275 952.2 783 62.2
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 7.1e-275 950.7 883 58.8
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 2.7e-274 948.7 792 61.4
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.5e-272 943.0 783 61.8
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 3.3e-272 941.8 782 61.8
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 5.9e-269 931.0 775 63.1
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 7.2e-267 924.1 783 61.7
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 3.6e-266 921.8 765 61.6
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 3.1e-262 908.7 782 61.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 5.9e-261 904.4 782 61.5
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.2e-259 898.7 771 58.5
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 8.8e-257 890.6 768 61.3
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 2.8e-239 832.4 709 63.2
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 3.1e-238 828.9 688 62.6
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 5.9e-237 824.7 737 57.9
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 6.6e-220 768.1 776 55.0
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 9.2e-190 667.9 774 46.1
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 6.9e-185 651.7 772 46.4
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 5.8e-176 622.1 798 44.9
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.8e-175 619.4 751 45.1
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 3.5e-173 612.8 418 73.2
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 1.3e-172 610.9 445 67.0
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 6.2e-170 602.1 760 44.1
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 3.9e-164 582.8 389 69.4
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 3.9e-164 582.8 389 69.4
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.0e-156 558.1 746 42.0
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 4.1e-153 546.2 404 67.6
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 4.4e-139 499.6 560 46.4
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 1.8e-137 494.2 270 85.6
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.4e-129 468.0 467 54.8
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.0e-119 435.3 255 80.0
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.9e-119 433.7 453 50.1
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.1e-105 388.7 744 35.1
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.1e-80 304.7 280 58.9
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.3e-71 274.6 757 29.5
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.3e-63 248.8 287 49.1
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.6e-61 241.9 189 64.0
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.8e-50 204.1 142 71.8
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.6e-43 181.4 149 65.8
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.7e-38 163.7 83 83.1
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.3e-30 137.9 65 90.8
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.5e-25 121.7 148 42.6
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.9e-23 114.4 142 40.8
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 2.9e-18 98.2 88 53.4
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 6.3e-13 80.5 66 57.6
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.4e-12 78.6 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 2.0e-11 75.5 108 41.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 6.5e-10 70.5 101 39.6
MBI11_g27346_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D025742 7.5e-06 57.0 28 92.9


User provided reference genes

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