Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1911.3 994 100.0
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1593.9 994 81.8
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1555.0 973 82.0
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1533.5 994 78.6
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1525.0 972 80.5
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1515.7 995 76.0
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1513.0 994 76.0
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1512.7 995 76.0
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1501.5 1019 76.7
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1497.6 984 75.8
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1494.6 984 75.9
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1492.2 996 76.1
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1490.3 997 75.9
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1489.9 994 75.6
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1481.1 994 76.2
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1474.1 991 75.3
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1469.5 997 75.2
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1464.9 994 74.3
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1464.5 994 75.1
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1463.7 996 75.3
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1459.9 995 75.0
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1459.1 994 74.3
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1455.3 989 74.7
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1455.3 994 73.8
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1454.9 994 74.6
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1454.1 1078 69.8
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1448.7 994 75.2
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1446.0 994 75.1
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1445.6 994 73.8
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1444.1 994 73.8
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1442.2 994 73.7
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1441.4 994 73.8
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1439.5 994 73.8
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1436.4 996 74.0
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1435.2 997 73.1
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1432.2 994 74.5
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1431.0 996 73.0
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1430.6 996 73.0
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1429.1 898 81.2
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1427.9 994 72.6
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1425.2 996 73.7
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1423.7 994 72.4
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1423.7 994 72.2
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1423.3 964 74.1
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1422.9 994 73.0
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1419.4 994 72.5
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1412.5 995 72.5
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1410.2 994 72.8
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1409.8 995 72.0
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1407.1 1008 71.8
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1406.7 994 72.4
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1404.4 995 71.8
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 995 73.0
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1400.2 995 71.5
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1398.6 994 72.1
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1395.9 994 70.9
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1395.6 995 71.5
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1391.7 994 71.3
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1387.9 995 70.8
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1386.7 995 70.6
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1386.7 964 75.0
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1385.5 965 73.0
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1385.2 995 71.9
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1384.8 994 71.0
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1383.6 994 70.7
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1383.6 994 72.3
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1382.9 995 71.2
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1377.1 982 72.2
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1377.1 982 72.2
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1372.1 994 69.8
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1371.7 994 69.9
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1369.4 994 69.7
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1369.4 994 69.8
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1364.7 996 70.1
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1364.7 994 69.0
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1362.4 995 70.9
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1358.6 964 72.1
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1351.7 1001 70.5
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1342.4 994 69.1
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1340.1 994 68.8
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1335.1 996 67.9
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1333.2 995 69.3
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1330.1 994 69.9
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1327.4 994 69.1
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1325.5 922 73.3
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1324.7 997 69.2
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1321.2 994 68.2
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1317.4 994 67.7
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1309.7 1004 67.3
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1307.4 996 67.7
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1301.6 996 67.3
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1298.9 995 67.3
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1296.6 998 66.8
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1295.0 942 71.3
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1294.3 996 67.4
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1282.3 1028 64.9
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1267.3 998 65.9
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1253.0 965 68.2
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1239.9 973 64.2
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1234.2 916 71.3
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1212.6 864 74.2
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1182.5 995 60.1
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1134.8 1002 61.6
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 6.5e-297 1024.2 996 54.5
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 2.5e-296 1022.3 724 72.0
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 6.1e-295 1017.7 916 60.5
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 6.8e-286 987.6 611 82.2
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 9.1e-283 977.2 1003 50.3
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.6e-282 976.5 598 82.9
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 5.9e-282 974.5 1005 52.9
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 7.7e-282 974.2 1005 53.2
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 1.8e-278 963.0 999 49.6
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 1.8e-275 953.0 1005 51.6
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.2e-258 897.1 842 57.1
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 4.1e-251 872.1 743 60.8
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.2e-247 860.5 611 72.3
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 1.4e-246 857.1 987 46.1
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 1.2e-239 833.9 811 53.3
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 3.7e-207 726.1 912 43.1
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 9.0e-206 721.5 1080 37.9
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 6.8e-177 625.5 431 74.5
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 4.1e-142 510.0 304 82.6
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 1.6e-141 508.1 356 71.1
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 1.5e-139 501.5 314 78.3
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.5e-120 438.3 1187 29.2
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 5.3e-97 360.1 268 70.1
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 5.3e-97 360.1 268 70.1
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 2.0e-80 305.1 1078 27.2
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 6.8e-52 210.3 244 47.1
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 1.0e-36 159.8 917 22.9
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 3.0e-31 141.7 119 64.7
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.9e-30 139.0 111 63.1
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 2.1e-29 135.6 142 52.1
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 2.4e-25 122.1 141 49.6
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.9e-22 112.5 85 65.9
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.6e-13 82.8 72 56.9
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 8.7e-07 60.5 49 59.2


User provided reference genes

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