Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 7.0e-159 563.9 288 100.0
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.2e-158 563.1 288 99.7
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 2.4e-135 485.7 290 86.6
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.1e-130 470.3 288 83.3
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 6.4e-128 461.1 289 81.0
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 2.1e-123 446.0 286 75.2
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 4.7e-123 444.9 287 78.4
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 6.8e-122 441.0 288 76.7
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.5e-121 439.9 287 79.8
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 9.9e-121 437.2 282 78.4
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.7e-120 435.3 288 75.0
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 8.4e-120 434.1 286 74.8
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.1e-119 433.7 282 78.0
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 4.1e-119 431.8 285 76.5
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.2e-118 430.3 282 77.3
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.7e-118 429.1 288 73.3
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 3.5e-118 428.7 282 74.1
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 4.6e-118 428.3 282 76.6
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 4.6e-118 428.3 284 75.4
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.3e-117 426.8 294 76.2
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.7e-117 426.4 292 74.3
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 2.3e-117 426.0 289 73.4
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 2.3e-117 426.0 288 72.6
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 3.9e-117 425.2 282 76.2
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 8.6e-117 424.1 288 71.9
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.5e-116 423.3 288 72.9
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.5e-116 423.3 281 74.0
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.9e-116 422.9 287 73.5
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 3.3e-116 422.2 289 73.4
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 3.3e-116 422.2 284 76.8
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.3e-116 421.8 286 72.4
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 5.6e-116 421.4 287 73.9
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.6e-116 420.6 292 74.0
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.2e-115 420.2 288 71.9
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.6e-115 419.9 285 73.7
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.1e-115 419.5 288 71.9
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.8e-115 419.1 287 72.8
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 4.7e-115 418.3 288 71.5
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.2e-115 417.9 287 72.8
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 6.8e-114 414.5 288 71.2
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 6.8e-114 414.5 281 74.7
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.2e-113 413.7 285 74.0
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.2e-113 413.7 288 72.9
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.2e-113 413.7 286 74.5
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 2.6e-113 412.5 285 72.3
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.4e-113 412.1 287 72.1
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 3.4e-113 412.1 288 70.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 9.9e-113 410.6 285 72.6
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 3.8e-112 408.7 283 73.1
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 6.4e-112 407.9 288 70.8
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.9e-111 406.4 282 72.7
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.9e-111 406.4 285 71.9
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 4.2e-111 405.2 284 70.1
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 5.4e-111 404.8 230 88.3
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.2e-110 403.7 237 86.9
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 1.6e-110 403.3 283 71.4
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 2.7e-110 402.5 259 76.4
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 7.8e-110 401.0 285 71.6
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.3e-109 399.4 297 69.4
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 5.1e-109 398.3 288 71.5
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 1.5e-108 396.7 281 70.8
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 3.3e-108 395.6 284 71.5
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 5.6e-108 394.8 280 70.0
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.8e-107 392.5 244 78.7
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.8e-107 392.5 291 68.0
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.6e-107 392.1 282 72.0
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 1.1e-106 390.6 319 64.6
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.0e-106 388.7 292 69.2
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 9.0e-106 387.5 283 68.2
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 9.0e-106 387.5 291 67.7
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 2.0e-105 386.3 285 68.8
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.4e-105 385.6 272 71.7
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.3e-104 383.6 272 71.0
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 1.4e-103 380.2 229 80.8
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.2e-103 378.6 295 65.8
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 5.4e-103 378.3 284 67.3
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.7e-101 373.2 284 68.0
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.7e-101 373.2 284 68.0
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.7e-101 373.2 284 68.0
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.3e-101 372.9 230 79.6
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 5.1e-101 371.7 290 65.5
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 8.7e-101 370.9 284 68.0
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 8.7e-101 370.9 278 70.5
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.5e-100 369.4 286 67.5
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 4.3e-100 368.6 284 67.6
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 4.3e-100 368.6 284 67.3
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 5.6e-100 368.2 261 71.6
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.4e-100 367.9 284 67.6
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 7.4e-100 367.9 284 66.9
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 1.6e-99 366.7 284 66.9
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 2.8e-99 365.9 218 86.2
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 4.8e-99 365.2 288 65.3
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 6.2e-99 364.8 278 67.6
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 6.2e-99 364.8 245 75.1
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.1e-98 364.0 293 63.5
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 3.1e-98 362.5 285 66.7
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 4.0e-98 362.1 284 66.2
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 4.0e-98 362.1 284 66.2
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 4.0e-98 362.1 284 66.2
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 9.0e-98 360.9 284 65.8
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.5e-97 360.1 282 66.3
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 3.4e-97 359.0 284 65.8
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 4.5e-97 358.6 284 65.8
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 5.8e-97 358.2 284 65.5
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 1.3e-96 357.1 277 66.4
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.9e-96 355.9 216 78.7
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 8.4e-96 354.4 283 66.1
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 2.4e-95 352.8 286 64.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 7.9e-94 347.8 278 65.8
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.7e-91 339.0 290 63.1
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.1e-90 337.4 280 62.1
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 2.2e-88 329.7 243 68.3
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.1e-87 327.4 229 71.2
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 7.1e-87 324.7 252 65.5
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 8.2e-83 311.2 231 68.4
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.8e-82 310.1 245 65.7
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 3.1e-82 309.3 231 68.0
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 3.1e-82 309.3 230 66.1
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.9e-76 290.0 292 50.7
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 4.3e-76 288.9 236 59.7
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 5.5e-71 271.9 289 49.5
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 2.6e-68 263.1 271 51.7
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.5e-64 248.1 210 65.7
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.7e-61 238.4 155 72.9
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 5.7e-60 235.3 268 51.5
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.1e-58 231.1 139 78.4
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.9e-55 220.3 211 60.7
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.2e-55 219.5 197 51.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.4e-55 218.0 197 51.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.6e-54 216.1 197 50.3
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 6.1e-54 215.3 258 50.4
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.1e-54 215.3 224 57.1
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.0e-54 214.9 197 50.3
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.3e-51 207.6 138 73.9
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.1e-46 190.3 162 64.8
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.3e-43 178.7 197 44.7
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-39 165.6 186 48.9
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.5e-31 141.0 119 63.0
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.6e-30 137.5 83 83.1
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.7e-30 136.0 207 45.4
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 8.0e-30 135.2 76 84.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.2e-28 131.3 182 39.0
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.4e-28 129.8 192 46.9
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 5.7e-28 129.0 189 42.9
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 3.2e-26 123.2 218 34.4
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 7.0e-26 122.1 99 63.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 7.0e-26 122.1 99 63.6
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.0e-25 120.6 199 35.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.4e-20 103.2 59 84.7
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-19 100.9 58 82.8
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.7e-19 99.8 57 82.5
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.4e-18 97.8 58 81.0
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-16 90.9 64 73.4
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 3.3e-15 86.7 91 47.3
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.8e-14 83.6 54 75.9
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 1.5e-12 77.8 51 70.6
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.3e-08 64.7 92 41.3
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 1.9e-07 60.8 46 65.2
HanXRQChr13g0418021 Helianthus annuus HOM05D055070 ORTHO05D005871 5.6e-07 59.3 82 45.1


User provided reference genes

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