Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 6.3e-63 243.8 114 100.0
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 4.3e-43 177.9 103 84.5
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 8.1e-34 147.1 84 79.8
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 8.9e-33 143.7 86 79.1
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 9.9e-32 140.2 85 74.1
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.9e-31 138.7 85 74.1
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 4.9e-31 137.9 86 73.3
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 2.4e-30 135.6 84 70.2
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 2.4e-30 135.6 86 72.1
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 2.1e-29 132.5 84 72.6
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 2.1e-29 132.5 72 81.9
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 4.6e-29 131.3 84 70.2
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 4.6e-29 131.3 86 70.9
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 1.0e-28 130.2 84 70.2
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 1.3e-28 129.8 86 70.9
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 1.7e-28 129.4 87 72.4
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 1.7e-28 129.4 101 57.4
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 3.0e-28 128.6 85 68.2
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 3.0e-28 128.6 85 68.2
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 5.1e-28 127.9 84 70.2
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 6.6e-28 127.5 91 64.8
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 8.6e-28 127.1 86 68.6
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 8.6e-28 127.1 85 67.1
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.1e-27 126.7 97 61.9
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 1.1e-27 126.7 86 69.8
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 2.5e-27 125.6 86 66.3
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 3.3e-27 125.2 84 67.9
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 4.3e-27 124.8 86 67.4
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 4.3e-27 124.8 86 66.3
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 5.6e-27 124.4 97 60.8
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 7.3e-27 124.0 86 67.4
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 7.3e-27 124.0 84 72.6
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 9.6e-27 123.6 86 66.3
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 9.6e-27 123.6 88 67.0
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.2e-26 123.2 86 65.1
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 1.6e-26 122.9 84 65.5
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 1.6e-26 122.9 84 65.5
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.1e-26 122.5 86 64.0
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 2.8e-26 122.1 83 63.9
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.8e-26 122.1 86 65.1
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.8e-26 122.1 86 65.1
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.8e-26 122.1 84 66.7
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 3.6e-26 121.7 86 68.6
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 3.6e-26 121.7 84 63.1
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 3.6e-26 121.7 93 59.1
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 3.6e-26 121.7 84 64.3
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 4.7e-26 121.3 84 65.5
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 1.1e-25 120.2 84 61.9
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.1e-25 120.2 73 74.0
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 1.4e-25 119.8 87 65.5
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.4e-25 119.8 86 66.3
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 1.8e-25 119.4 86 66.3
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 3.1e-25 118.6 86 65.1
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 3.1e-25 118.6 85 61.2
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 4.0e-25 118.2 87 62.1
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 6.9e-25 117.5 84 72.6
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.2e-24 116.7 95 54.7
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.2e-24 116.7 86 62.8
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.2e-24 116.7 86 65.1
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 1.2e-24 116.7 84 61.9
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 2.0e-24 115.9 81 65.4
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 2.6e-24 115.5 84 61.9
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 3.4e-24 115.2 81 64.2
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 5.8e-24 114.4 84 64.3
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 5.8e-24 114.4 84 61.9
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 1.3e-23 113.2 81 65.4
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 2.2e-23 112.5 84 63.1
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 3.8e-23 111.7 87 62.1
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 4.9e-23 111.3 82 61.0
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 4.9e-23 111.3 84 59.5
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 8.4e-23 110.5 73 67.1
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 8.4e-23 110.5 85 61.2
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 1.1e-22 110.2 88 60.2
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.9e-22 109.4 84 58.3
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.4e-22 109.0 97 56.7
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 2.4e-22 109.0 85 64.7
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 4.2e-22 108.2 84 58.3
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 5.4e-22 107.8 84 57.1
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 5.4e-22 107.8 84 57.1
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 7.1e-22 107.5 85 61.2
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 9.3e-22 107.1 84 56.0
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 2.7e-21 105.5 84 59.5
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 2.7e-21 105.5 84 56.0
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 7.8e-21 104.0 84 58.3
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 1.3e-20 103.2 84 57.1
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 1.3e-20 103.2 84 57.1
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 3.0e-20 102.1 86 57.0
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 8.7e-20 100.5 71 62.0
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 8.7e-20 100.5 84 57.1
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 8.7e-20 100.5 84 57.1
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 1.5e-19 99.8 84 54.8
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 1.9e-19 99.4 57 78.9
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.9e-19 99.4 84 57.1
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 2.5e-19 99.0 100 55.0
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 3.6e-18 95.1 71 57.7
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 3.6e-18 95.1 84 50.0
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 4.8e-18 94.7 84 53.6
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 8.1e-18 94.0 84 52.4
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 8.1e-18 94.0 86 51.2
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 1.8e-17 92.8 80 57.5
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 2.4e-17 92.4 66 66.7
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 3.1e-17 92.0 90 51.1
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 9.9e-16 87.0 54 68.5
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 2.2e-15 85.9 70 52.9
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 4.9e-15 84.7 88 48.9
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 6.4e-15 84.3 92 46.7
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 6.4e-15 84.3 92 46.7
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.4e-14 83.2 88 46.6
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 2.7e-13 79.0 90 45.6
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 2.7e-13 79.0 88 44.3
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 4.6e-13 78.2 73 52.1
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 6.0e-13 77.8 89 47.2
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 7.9e-13 77.4 93 41.9
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 7.9e-13 77.4 55 60.0
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 3.9e-12 75.1 82 47.6
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 5.1e-12 74.7 55 58.2
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 1.1e-11 73.6 95 43.2
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 1.1e-11 73.6 93 41.9
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 1.5e-11 73.2 95 40.0
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 1.9e-11 72.8 88 39.8
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 1.9e-11 72.8 97 42.3
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 1.9e-11 72.8 92 42.4
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 2.5e-11 72.4 71 49.3
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 3.3e-11 72.0 90 41.1
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 7.4e-11 70.9 91 44.0
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 1.3e-10 70.1 92 41.3
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 6.2e-10 67.8 45 68.9
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 1.4e-09 66.6 55 52.7
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 5.3e-09 64.7 75 40.0
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 5.3e-09 64.7 75 40.0
RcHm_v2.0_Chr1g0326231 Rosa chinensis HOM05D005781 ORTHO05D006835 3.4e-08 62.0 59 47.5
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 1.3e-07 60.1 42 59.5
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 1.7e-07 59.7 46 58.7
Zm00001eb318190 Zea mays HOM05D000360 ORTHO05D006835 8.4e-07 57.4 43 58.1
Lalb_Chr07g0188641 Lupinus albus HOM05D005781 ORTHO05D006835 1.4e-06 56.6 49 51.0
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 7.1e-06 54.3 51 49.0


User provided reference genes

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