Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 5.3e-301 1036.9 542 100.0
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 6.7e-296 1020.0 543 98.2
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 1.7e-243 845.9 530 83.2
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 2.5e-234 815.5 474 85.9
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 2.5e-234 815.5 543 78.3
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 2.9e-230 802.0 542 77.5
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 6.4e-230 800.8 549 77.2
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 1.3e-227 793.1 549 76.5
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.3e-227 793.1 542 75.5
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 3.3e-226 788.5 547 74.8
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 2.8e-225 785.4 477 82.8
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 1.5e-223 779.6 523 76.7
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 7.6e-223 777.3 547 75.1
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 3.2e-221 771.9 503 78.3
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 4.2e-221 771.5 550 72.7
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 1.3e-219 766.5 529 74.5
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 6.2e-217 757.7 555 72.6
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 1.8e-216 756.1 548 71.9
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 4.0e-216 755.0 551 71.9
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 4.0e-216 755.0 543 72.6
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 9.0e-216 753.8 530 71.3
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 2.0e-215 752.7 539 71.8
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 3.4e-215 751.9 538 72.7
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 4.4e-215 751.5 545 71.4
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 4.4e-215 751.5 551 71.0
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 9.9e-215 750.4 522 73.6
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 2.2e-214 749.2 547 73.3
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 3.8e-214 748.4 556 71.6
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 3.8e-214 748.4 522 73.4
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 8.4e-214 747.3 555 71.7
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 8.4e-214 747.3 547 71.3
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 4.2e-213 745.0 527 74.0
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 4.2e-213 745.0 544 72.1
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 5.4e-213 744.6 549 72.5
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 4.6e-212 741.5 527 73.6
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 4.6e-212 741.5 524 73.9
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 1.3e-211 740.0 552 72.3
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 2.3e-211 739.2 536 69.4
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 3.0e-211 738.8 543 71.8
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 5.1e-211 738.0 541 69.5
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 5.1e-211 738.0 547 71.5
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 1.1e-210 736.9 548 69.2
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 2.5e-210 735.7 577 67.9
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 9.6e-210 733.8 542 70.7
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.8e-208 729.6 540 70.4
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 1.8e-208 729.6 546 69.2
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 4.0e-208 728.4 499 74.1
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 5.3e-208 728.0 524 71.2
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 9.0e-208 727.2 544 69.5
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 9.0e-208 727.2 531 70.1
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 3.4e-207 725.3 530 69.4
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 3.8e-206 721.8 549 69.2
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 4.2e-205 718.4 542 68.5
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 5.5e-205 718.0 547 70.4
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 1.6e-204 716.5 535 67.5
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 2.7e-204 715.7 482 74.5
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 4.6e-204 714.9 499 71.9
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 1.3e-203 713.4 471 74.5
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 1.1e-202 710.3 443 78.3
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 1.5e-202 709.9 545 68.3
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 4.3e-202 708.4 459 76.0
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 1.1e-200 703.7 546 67.8
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 1.2e-199 700.3 532 68.2
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 2.6e-199 699.1 527 67.4
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 4.5e-199 698.4 522 70.9
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 3.5e-196 688.7 440 76.8
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 6.0e-196 688.0 546 65.6
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 5.1e-195 684.9 541 68.4
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 6.3e-193 677.9 555 63.1
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 2.4e-192 676.0 551 63.9
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 3.4e-191 672.2 542 62.9
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 1.3e-190 670.2 543 62.8
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 2.9e-190 669.1 549 62.8
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 2.9e-190 669.1 552 63.2
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 3.8e-190 668.7 476 69.1
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 6.5e-190 667.9 471 70.5
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 6.5e-190 667.9 459 72.3
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 4.2e-189 665.2 548 63.9
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 5.5e-189 664.8 542 62.5
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 9.3e-189 664.1 547 66.7
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 1.2e-188 663.7 549 62.5
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 2.3e-187 659.4 473 67.9
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 4.3e-186 655.2 462 68.6
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 4.3e-186 655.2 530 65.5
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 1.6e-185 653.3 530 65.3
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 2.2e-185 652.9 506 66.0
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 4.8e-185 651.7 523 64.4
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 3.0e-179 632.5 546 63.6
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 1.8e-176 623.2 436 68.8
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 2.0e-175 619.8 436 68.3
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 1.3e-174 617.1 481 65.3
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 9.1e-168 594.3 461 64.2
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 9.4e-165 584.3 545 56.0
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 1.3e-158 563.9 531 54.8
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 6.5e-158 561.6 490 63.1
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 8.0e-156 554.7 488 60.2
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 3.7e-153 545.8 373 74.3
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 1.7e-150 537.0 533 57.2
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 5.0e-142 508.8 406 64.0
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 6.6e-142 508.4 355 67.0
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 3.0e-139 499.6 546 48.4
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.4e-138 495.7 382 68.1
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 1.1e-128 464.5 454 51.3
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 3.2e-128 463.0 491 47.0
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 2.0e-127 460.3 491 48.3
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 3.3e-125 453.0 455 49.7
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 6.0e-119 432.2 448 57.4
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 1.3e-118 431.0 478 46.7
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 2.1e-108 397.1 439 44.6
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 7.6e-74 282.3 479 34.4
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 1.1e-64 251.9 425 34.1
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 7.2e-56 222.6 385 41.6
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 7.9e-55 219.2 134 76.9
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 2.6e-53 214.2 137 73.7
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 8.8e-46 189.1 138 67.4
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.3e-41 175.3 107 81.3
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 1.1e-40 172.2 267 42.7
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 7.7e-34 149.4 439 24.8
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 1.0e-30 139.0 92 70.7
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 1.2e-29 135.6 94 74.5
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 2.0e-26 124.8 114 63.2
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 9.5e-24 115.9 67 83.6
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 3.0e-22 110.9 208 36.5
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 7.5e-21 106.3 195 33.8
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 1.7e-20 105.1 220 32.7
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 4.9e-20 103.6 120 53.3
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 1.2e-15 89.0 80 62.5
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 4.3e-08 63.9 140 34.3
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 7.3e-08 63.2 459 21.1
BolC9t57452H Brassica oleracea HOM05D006019 ORTHO05D000049 1.4e-06 58.9 61 55.7


User provided reference genes

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