Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000529 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 1.7e-23 111.7 53 100.0
CSS0010590 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 6.9e-20 99.8 54 92.6
CSS0047210 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 6.9e-20 99.8 54 92.6
Haze_01648 Corylus avellana HOM05D003483 ORTHO05D004101 5.1e-15 83.6 49 83.7
Gohir.A01G177800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 6.7e-15 83.2 46 89.1
Gorai.002G209300 Gossypium raimondii HOM05D003483 ORTHO05D004101 6.7e-15 83.2 46 89.1
Haze_01644 Corylus avellana HOM05D003483 ORTHO05D004101 1.5e-14 82.0 46 89.1
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 1.9e-14 81.6 46 91.3
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 1.9e-14 81.6 46 91.3
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 2.5e-14 81.3 45 86.7
Eucgr.I02716 Eucalyptus grandis HOM05D003483 ORTHO05D004101 2.5e-14 81.3 46 87.0
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 2.5e-14 81.3 46 89.1
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 2.5e-14 81.3 46 89.1
Nitab4.5_0000044g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.5e-14 81.3 45 86.7
Nitab4.5_0001783g0130 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.5e-14 81.3 45 86.7
PSO170G3925 Papaver somniferum HOM05D003483 ORTHO05D004101 2.5e-14 81.3 46 89.1
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 2.5e-14 81.3 46 89.1
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 2.5e-14 81.3 46 89.1
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 2.5e-14 81.3 46 89.1
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
arahy.Tifrunner.gnm1.ann1.19GFYA Arachis hypogaea HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
ClCG09G014000 Citrullus lanatus HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
FAN04G0580 Fragaria x ananassa HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 3.3e-14 80.9 46 87.0
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 4.3e-14 80.5 45 86.7
Duzib132G0067 Durio zibethinus HOM05D003483 ORTHO05D004101 4.3e-14 80.5 46 84.8
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 4.3e-14 80.5 46 84.8
PGSC0003DMG400033698 Solanum tuberosum HOM05D003483 ORTHO05D004101 4.3e-14 80.5 45 86.7
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 5.6e-14 80.1 46 87.0
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 7.4e-14 79.7 46 84.8
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 7.4e-14 79.7 46 84.8
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 7.4e-14 79.7 45 88.9
Gohir.D01G168600 Gossypium hirsutum HOM05D003483 ORTHO05D004101 7.4e-14 79.7 46 87.0
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 7.4e-14 79.7 45 88.9
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 7.4e-14 79.7 46 84.8
RcHm_v2.0_Chr7g0222941 Rosa chinensis HOM05D003483 ORTHO05D004101 7.4e-14 79.7 46 84.8
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 7.4e-14 79.7 46 82.6
Actinidia39049 Actinidia chinensis HOM05D003483 ORTHO05D004101 9.6e-14 79.3 46 82.6
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 9.6e-14 79.3 45 86.7
Peaxi162Scf00152g01330 Petunia axillaris HOM05D003483 ORTHO05D004101 9.6e-14 79.3 45 86.7
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 9.6e-14 79.3 45 86.7
Solyc11g044530.2 Solanum lycopersicum HOM05D003483 ORTHO05D004101 9.6e-14 79.3 45 84.4
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 1.6e-13 78.6 46 84.8
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 1.6e-13 78.6 46 84.8
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 2.1e-13 78.2 46 84.8
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 2.1e-13 78.2 45 82.2
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 4.8e-13 77.0 45 80.0
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 4.8e-13 77.0 45 84.4
CANSAT11G2020 Cannabis sativa HOM05D003483 ORTHO05D004101 6.2e-13 76.6 46 82.6
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 6.2e-13 76.6 46 82.6
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 6.2e-13 76.6 45 82.2
Lj6g0009955 Lotus japonicus HOM05D003483 ORTHO05D004101 8.1e-13 76.3 46 80.4
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 8.1e-13 76.3 46 82.6
Atru.chr6.836 Acer truncatum HOM05D003483 ORTHO05D004101 1.1e-12 75.9 45 84.4
QL02p098396 Quercus lobata HOM05D003483 ORTHO05D004101 2.4e-12 74.7 45 80.0
Rhsim11G0130100 Rhododendron simsii HOM05D003483 ORTHO05D004101 2.4e-12 74.7 46 84.8
RcHm_v2.0_Chr7g0222931 Rosa chinensis HOM05D003483 ORTHO05D004101 2.4e-12 74.7 47 76.6
DCAR_021518 Daucus carota HOM05D003483 ORTHO05D004101 3.1e-12 74.3 45 82.2
CARHR147060 Cardamine hirsuta HOM05D003483 ORTHO05D004101 4.0e-12 73.9 46 78.3
Cfa005534 Carpinus fangiana HOM05D003483 ORTHO05D004101 4.0e-12 73.9 46 78.3
SGA_v2.0_scaffold145G36069 Striga asiatica HOM05D003483 ORTHO05D004101 4.0e-12 73.9 45 75.6
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 5.3e-12 73.6 47 78.7
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 5.3e-12 73.6 46 76.1
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 5.3e-12 73.6 46 76.1
AT3G26070 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 9.0e-12 72.8 46 76.1
Carub.0005s0393 Capsella rubella HOM05D003483 ORTHO05D004101 9.0e-12 72.8 46 73.9
Aa31LG2G6290 Aethionema arabicum HOM05D003483 ORTHO05D004101 1.2e-11 72.4 46 73.9
AL5G14750 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 1.2e-11 72.4 46 73.9
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 1.2e-11 72.4 46 76.1
Thhalv10004837m.g Eutrema salsugineum HOM05D003483 ORTHO05D004101 1.2e-11 72.4 46 73.9
TPR.G22934 Trifolium pratense HOM05D003483 ORTHO05D004101 1.2e-11 72.4 49 67.3
HPP92_027704 Vanilla planifolia HOM05D003483 ORTHO05D004101 1.2e-11 72.4 46 71.7
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 1.5e-11 72.0 46 80.4
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 1.5e-11 72.0 45 77.8
THA.LOC104824018 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 1.5e-11 72.0 47 76.6
TPR.G2131 Trifolium pratense HOM05D003483 ORTHO05D004101 1.5e-11 72.0 44 79.5
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 2.0e-11 71.6 46 73.9
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 2.0e-11 71.6 46 73.9
Nn1g08607 Nelumbo nucifera HOM05D003483 ORTHO05D004101 2.0e-11 71.6 49 69.4
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 2.0e-11 71.6 46 73.9
SalBow6G5065 Salvia bowleyana HOM05D003483 ORTHO05D004101 2.0e-11 71.6 45 73.3
SalBow6G7249 Salvia bowleyana HOM05D003483 ORTHO05D004101 2.0e-11 71.6 45 73.3
Aqoxy5G02410 Aquilegia oxysepala HOM05D003483 ORTHO05D004101 2.6e-11 71.2 46 73.9
BcaC06g31097 Brassica carinata HOM05D000468 ORTHO05D004101 2.6e-11 71.2 46 71.7
BcaC06g33930 Brassica carinata HOM05D003483 ORTHO05D004101 2.6e-11 71.2 46 71.7
C07p35050 Brassica napus HOM05D003483 ORTHO05D004101 2.6e-11 71.2 46 71.7
AUR62017510 Chenopodium quinoa HOM05D003483 ORTHO05D004101 2.6e-11 71.2 45 77.8
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 2.6e-11 71.2 46 73.9
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 3.4e-11 70.9 46 71.7
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 3.4e-11 70.9 46 76.1
Sc06g0009790 Simmondsia chinensis HOM05D003483 ORTHO05D004101 3.4e-11 70.9 45 73.3
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 4.5e-11 70.5 49 71.4
BcaC06g31094 Brassica carinata HOM05D003483 ORTHO05D004101 4.5e-11 70.5 46 71.7
A06p42270 Brassica napus HOM05D003483 ORTHO05D004101 4.5e-11 70.5 46 71.7
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 4.5e-11 70.5 46 71.7
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 4.5e-11 70.5 46 71.7
Sp2g15270 Schrenkiella parvula HOM05D003483 ORTHO05D004101 4.5e-11 70.5 46 71.7
TPR.G2065 Trifolium pratense HOM05D003483 ORTHO05D004101 4.5e-11 70.5 46 71.7
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 4.5e-11 70.5 46 71.7
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 5.8e-11 70.1 47 68.1
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 5.8e-11 70.1 46 69.6
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 7.6e-11 69.7 47 72.3
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 9.9e-11 69.3 46 69.6
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 9.9e-11 69.3 46 71.7
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 9.9e-11 69.3 46 73.9
EL10Ac9g22715 Beta vulgaris HOM05D003483 ORTHO05D004101 1.7e-10 68.6 45 73.3
Gohir.D04G171800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 1.7e-10 68.6 46 71.7
Gorai.012G160700 Gossypium raimondii HOM05D003483 ORTHO05D004101 1.7e-10 68.6 46 71.7
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 1.7e-10 68.6 46 71.7
Sabra03G0012000 Salix brachista HOM05D003483 ORTHO05D004101 1.7e-10 68.6 44 72.7
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 2.2e-10 68.2 46 71.7
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 2.2e-10 68.2 46 71.7
Sopen01g046760 Solanum pennellii HOM05D003483 ORTHO05D004101 2.2e-10 68.2 46 73.9
vmacro19900 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 2.2e-10 68.2 47 68.1
Hma1.2p1_0217F.1_g091970 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 2.9e-10 67.8 46 69.6
QL02p098403 Quercus lobata HOM05D003483 ORTHO05D004101 2.9e-10 67.8 59 57.6
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 3.8e-10 67.4 46 69.6
AL5G14760 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 4.9e-10 67.0 46 69.6
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 4.9e-10 67.0 46 69.6
PGSC0003DMG400023753 Solanum tuberosum HOM05D003483 ORTHO05D004101 4.9e-10 67.0 46 71.7
CAN.G1577.5 Capsicum annuum HOM05D003483 ORTHO05D004101 1.1e-09 65.9 46 69.6
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 1.1e-09 65.9 46 67.4
Glyma.08G185000 Glycine max HOM05D003483 ORTHO05D004101 1.4e-09 65.5 46 67.4
Gohir.A04G126900 Gossypium hirsutum HOM05D003483 ORTHO05D004101 1.4e-09 65.5 44 72.7
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.4e-09 65.5 46 71.7
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 1.9e-09 65.1 46 69.6
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 2.4e-09 64.7 46 67.4
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 2.4e-09 64.7 46 69.6
Hund01591 Selenicereus undatus HOM05D003483 ORTHO05D004101 2.4e-09 64.7 45 73.3
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 2.4e-09 64.7 46 67.4
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 4.2e-09 63.9 46 67.4
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 7.1e-09 63.2 46 67.4
AUR62015054 Chenopodium quinoa HOM05D003483 ORTHO05D004101 1.2e-08 62.4 46 69.6
Carub.0005s0394 Capsella rubella HOM05D003483 ORTHO05D004101 2.7e-08 61.2 47 63.8
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 2.7e-08 61.2 46 63.0
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 6.0e-08 60.1 44 63.6
Lalb_Chr15g0090651 Lupinus albus HOM05D003483 ORTHO05D004101 7.9e-08 59.7 37 83.8
PRCOL_00005437 Prasinoderma coloniale HOM05D003483 ORTHO05D004101 9.6e-06 52.8 45 55.6


User provided reference genes

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