Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 2691.4 1403 100.0
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 2678.3 1419 98.7
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1793.9 1409 69.6
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1736.9 1434 66.7
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1662.5 1429 63.9
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1572.8 1281 65.7
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1557.3 1404 61.3
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1535.4 1429 60.0
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1531.5 1412 60.3
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1525.8 1413 59.6
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1516.1 1417 60.8
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1506.9 1414 60.0
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1497.6 1426 58.6
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1485.3 1437 58.8
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1481.1 1419 58.4
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1480.7 1417 58.5
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1477.6 1241 63.0
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1470.3 1430 57.5
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1469.9 1436 56.5
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1469.1 1245 63.4
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1468.0 1423 58.5
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1467.2 1233 65.5
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1459.9 1441 57.5
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1457.2 1448 56.1
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1448.7 1452 55.9
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1444.9 1409 57.8
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1436.4 1407 58.1
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1426.0 1426 56.6
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1414.4 1410 56.7
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1409.4 1418 57.4
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1399.8 1389 56.1
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1391.7 1445 54.0
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1388.2 1440 54.9
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1385.2 1430 53.9
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1384.4 1427 55.8
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1383.6 1389 55.7
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1377.5 1421 54.5
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1376.3 1448 55.2
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 1369.0 1233 60.9
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1366.7 1411 54.6
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1359.0 1233 60.3
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1346.6 1400 56.5
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1320.1 1444 52.2
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1258.8 1407 51.7
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1257.7 1362 52.1
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1242.6 1446 50.0
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1239.6 1349 52.1
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1236.9 1390 51.2
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1236.5 1396 51.4
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1233.4 1361 51.6
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 0.0e+00 1231.9 1181 58.3
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1229.5 1441 49.8
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 1229.2 1252 54.2
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1226.8 1407 50.4
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 0.0e+00 1177.2 1203 55.9
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 0.0e+00 1172.9 1098 59.5
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1138.3 1390 48.6
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 0.0e+00 1132.9 1115 56.5
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 0.0e+00 1128.6 864 70.6
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 0.0e+00 1090.1 1038 59.2
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 0.0e+00 1077.0 1051 58.3
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 9.6e-312 1073.5 1427 46.1
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 4.8e-311 1071.6 853 68.5
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 1.1e-305 1053.9 1131 53.9
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 1.5e-299 1033.5 1041 56.5
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 1.7e-298 1030.0 1039 56.7
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 1.6e-288 996.9 1448 43.2
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 2.1e-277 959.9 1362 43.0
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.3e-263 914.1 712 69.9
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 1.3e-237 827.8 1367 39.6
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 2.6e-235 820.1 712 62.5
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 6.1e-232 808.9 1431 37.9
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 7.7e-211 738.8 1009 45.9
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 3.2e-209 733.4 1015 46.5
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 2.2e-205 720.7 624 63.6
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 6.1e-192 676.0 1502 34.2
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 3.7e-181 640.2 1485 33.8
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 2.5e-177 627.5 1360 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 4.3e-177 626.7 1341 34.2
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 5.3e-135 486.9 670 46.1
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 1.8e-119 435.3 476 51.3
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 2.2e-96 358.6 1311 26.4
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 9.1e-95 353.2 291 64.9
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 4.3e-84 317.8 341 54.3
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 1.0e-82 313.2 357 49.3
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 1.7e-72 279.3 271 56.5
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 3.6e-67 261.5 276 55.1
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 1.1e-52 213.4 263 47.9
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 2.1e-46 192.6 200 56.5
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 3.1e-42 178.7 121 80.2
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 2.7e-38 165.6 293 39.2
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.6e-35 156.4 105 81.0
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 2.7e-30 139.0 108 62.0
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 4.3e-20 105.1 150 50.0
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 4.5e-17 95.1 87 60.9
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 5.1e-13 81.6 118 43.2
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 7.4e-12 77.8 278 25.9
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 2.1e-06 59.7 93 40.9


User provided reference genes

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