Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000512 Camellia sinensis var. sinensis HOM05D004595 ORTHO05D005800 6.2e-64 247.3 124 100.0
CSS0009672 Camellia sinensis var. sinensis HOM05D004595 ORTHO05D005800 9.0e-63 243.4 123 96.7
Actinidia31498 Actinidia chinensis HOM05D004595 ORTHO05D005800 8.7e-50 200.3 123 80.5
CSS0020169 Camellia sinensis var. sinensis HOM05D004595 ORTHO05D005800 6.9e-47 190.7 125 74.4
Rhsim07G0118500 Rhododendron simsii HOM05D004595 ORTHO05D005800 1.2e-43 179.9 123 73.2
Dinv28866 Davidia involucrata HOM05D004595 ORTHO05D005800 3.9e-42 174.9 124 70.2
Rhsim07G0118300 Rhododendron simsii HOM05D004595 ORTHO05D005800 2.6e-38 162.2 152 59.2
TAR375G0350 Trochodendron aralioides HOM05D004595 ORTHO05D005800 3.9e-34 148.3 125 61.6
Lj2C227T10 Lonicera japonica HOM05D004595 ORTHO05D005800 6.7e-34 147.5 124 62.9
Atru.chr9.1225 Acer truncatum HOM05D004595 ORTHO05D005800 4.4e-33 144.8 124 58.9
Oeu037379.1 Olea europaea HOM05D004595 ORTHO05D005800 1.3e-32 143.3 125 60.0
Cc08_g11470 Coffea canephora HOM05D004595 ORTHO05D005800 1.7e-32 142.9 124 58.9
MSTRG.1950 Avicennia marina HOM05D004595 ORTHO05D005800 3.7e-32 141.7 124 60.5
DCAR_004592 Daucus carota HOM05D004595 ORTHO05D005800 3.7e-32 141.7 124 61.3
TAR004G0003 Trochodendron aralioides HOM05D004595 ORTHO05D005800 3.7e-32 141.7 124 58.9
CiPaw.11G069600 Carya illinoinensis HOM05D004595 ORTHO05D005800 4.8e-32 141.4 124 57.3
Manes.01G087300 Manihot esculenta HOM05D004595 ORTHO05D005800 8.2e-32 140.6 124 59.7
Nitab4.5_0000500g0120 Nicotiana tabacum HOM05D004595 ORTHO05D005800 4.1e-31 138.3 122 57.4
Thecc.03G242900 Theobroma cacao HOM05D004595 ORTHO05D005800 7.0e-31 137.5 125 61.6
Dinv44053 Davidia involucrata HOM05D004595 ORTHO05D005800 1.6e-30 136.3 124 58.9
Gorai.007G029800 Gossypium raimondii HOM05D004595 ORTHO05D005800 4.5e-30 134.8 124 58.1
Nitab4.5_0007628g0030 Nicotiana tabacum HOM05D004595 ORTHO05D005800 4.5e-30 134.8 122 57.4
Aqoxy3G02685 Aquilegia oxysepala HOM05D004595 ORTHO05D005800 5.9e-30 134.4 125 58.4
Prupe.5G058600 Prunus persica HOM05D004595 ORTHO05D005800 5.9e-30 134.4 123 57.7
Duzib205G1146 Durio zibethinus HOM05D004595 ORTHO05D005800 7.7e-30 134.0 126 61.1
QL12p009065 Quercus lobata HOM05D004595 ORTHO05D005800 7.7e-30 134.0 124 58.1
TWI60G0774 Tripterygium wilfordii HOM05D004595 ORTHO05D005800 1.3e-29 133.3 123 59.3
PGSC0003DMG400026251 Solanum tuberosum HOM05D004595 ORTHO05D005800 1.7e-29 132.9 124 58.9
PGR031G0135 Punica granatum HOM05D004595 ORTHO05D005800 2.2e-29 132.5 123 55.3
CAN.G761.19 Capsicum annuum HOM05D004595 ORTHO05D005800 2.9e-29 132.1 123 57.7
vmacro14128 Vaccinium macrocarpon HOM05D004595 ORTHO05D005800 3.8e-29 131.7 160 50.0
RcHm_v2.0_Chr7g0205281 Rosa chinensis HOM05D004595 ORTHO05D005800 5.0e-29 131.3 124 58.9
Solyc08g077990.3 Solanum lycopersicum HOM05D004595 ORTHO05D005800 5.0e-29 131.3 123 56.9
COL.COLO4_07512 Corchorus olitorius HOM05D004595 ORTHO05D005800 6.5e-29 131.0 123 56.9
Nn1g08279 Nelumbo nucifera HOM05D004595 ORTHO05D005800 6.5e-29 131.0 125 55.2
SalBow1G8649 Salvia bowleyana HOM05D004595 ORTHO05D005800 6.5e-29 131.0 124 55.6
Gohir.D11G027300 Gossypium hirsutum HOM05D004595 ORTHO05D005800 8.5e-29 130.6 124 56.5
Gohir.D08G184200 Gossypium hirsutum HOM05D004595 ORTHO05D005800 1.9e-28 129.4 123 56.9
Gorai.004G193500 Gossypium raimondii HOM05D004595 ORTHO05D005800 1.9e-28 129.4 123 56.9
Sopen08g026500 Solanum pennellii HOM05D004595 ORTHO05D005800 3.2e-28 128.6 123 56.1
FAN08G0032 Fragaria x ananassa HOM05D004595 ORTHO05D005800 4.2e-28 128.3 124 58.1
Gohir.A08G165500 Gossypium hirsutum HOM05D004595 ORTHO05D005800 9.4e-28 127.1 123 56.1
Gohir.A11G028800 Gossypium hirsutum HOM05D004595 ORTHO05D005800 9.4e-28 127.1 125 56.8
Potri.001G151900 Populus trichocarpa HOM05D004595 ORTHO05D005800 1.6e-27 126.3 124 54.8
FvH4_5g20210 Fragaria vesca HOM05D004595 ORTHO05D005800 2.1e-27 125.9 124 57.3
FAN13G0010 Fragaria x ananassa HOM05D004595 ORTHO05D005800 2.7e-27 125.6 124 57.3
FAN13G1547 Fragaria x ananassa HOM05D004595 ORTHO05D005800 2.7e-27 125.6 124 57.3
ECA240G1307 Erigeron canadensis HOM05D004595 ORTHO05D005800 3.6e-27 125.2 123 57.7
SalBow1G1528 Salvia bowleyana HOM05D004595 ORTHO05D005800 8.0e-27 124.0 125 54.4
SGA_v2.0_scaffold20G09239 Striga asiatica HOM05D004595 ORTHO05D005800 8.0e-27 124.0 125 56.0
TAR374G0819 Trochodendron aralioides HOM05D004595 ORTHO05D005800 1.0e-26 123.6 124 54.0
GSVIVG01002113001 Vitis vinifera HOM05D004595 ORTHO05D005800 1.1e-25 120.2 162 46.9
TWI15G0872 Tripterygium wilfordii HOM05D004595 ORTHO05D005800 1.5e-25 119.8 123 52.0
Sabra03G0053300 Salix brachista HOM05D004595 ORTHO05D005800 2.6e-25 119.0 124 53.2
MBI04_g28359_MAGBIO Magnolia biondii HOM05D004595 ORTHO05D005800 4.4e-25 118.2 125 53.6
PSO782G5445 Papaver somniferum HOM05D004595 ORTHO05D005800 5.7e-25 117.9 125 52.0
Cpa.g.sc42.59 Carica papaya HOM05D004595 ORTHO05D005800 1.3e-24 116.7 123 51.2
Migut.E00822 Erythranthe guttata HOM05D004595 ORTHO05D005800 1.3e-24 116.7 126 53.2
Sabra01G0121600 Salix brachista HOM05D004595 ORTHO05D005800 1.3e-24 116.7 124 51.6
QL04p029927 Quercus lobata HOM05D004595 ORTHO05D005800 1.7e-24 116.3 125 51.2
MD04G1051700 Malus domestica HOM05D004595 ORTHO05D005800 2.2e-24 115.9 124 54.0
GSVIVG01018293001 Vitis vinifera HOM05D004595 ORTHO05D005800 2.2e-24 115.9 124 53.2
FAN18G0798 Fragaria x ananassa HOM05D004595 ORTHO05D005800 4.8e-24 114.8 133 51.9
THA.LOC104807924 Tarenaya hassleriana HOM05D004595 ORTHO05D005800 4.8e-24 114.8 125 53.6
MD06G1048400 Malus domestica HOM05D004595 ORTHO05D005800 6.3e-24 114.4 124 53.2
Sc01g0008080 Simmondsia chinensis HOM05D004595 ORTHO05D005800 1.1e-23 113.6 124 49.2
PSO063G2875 Papaver somniferum HOM05D004595 ORTHO05D005800 3.1e-23 112.1 124 51.6
Potri.003G082600 Populus trichocarpa HOM05D004595 ORTHO05D005800 3.1e-23 112.1 124 50.0
Haze_07975 Corylus avellana HOM05D004595 ORTHO05D005800 5.3e-23 111.3 101 58.4
AUR62007157 Chenopodium quinoa HOM05D004595 ORTHO05D005800 7.0e-23 110.9 124 50.0
CANSAT21G1292 Cannabis sativa HOM05D004595 ORTHO05D005800 9.1e-23 110.5 124 50.0
AT4G16970 Arabidopsis thaliana HOM05D004595 ORTHO05D005800 1.6e-22 109.8 124 50.8
AL7G37750 Arabidopsis lyrata HOM05D004595 ORTHO05D005800 2.7e-22 109.0 124 50.8
EL10Ac5g12285 Beta vulgaris HOM05D004595 ORTHO05D005800 4.5e-22 108.2 123 47.2
Peaxi162Scf00446g00213 Petunia axillaris HOM05D004595 ORTHO05D005800 1.7e-21 106.3 122 51.6
Sp7g17210 Schrenkiella parvula HOM05D004595 ORTHO05D005800 3.8e-21 105.1 124 49.2
Ah.12g054050 Amaranthus hybridus HOM05D004595 ORTHO05D005800 1.5e-20 103.2 123 47.2
FvH4_7g10370 Fragaria vesca HOM05D004595 ORTHO05D005800 1.5e-20 103.2 129 48.1
FAN06G0382 Fragaria x ananassa HOM05D004595 ORTHO05D005800 1.5e-20 103.2 129 48.1
Sed0025323 Sechium edule HOM05D004595 ORTHO05D005800 1.9e-20 102.8 123 43.9
FAN03G1267 Fragaria x ananassa HOM05D004595 ORTHO05D005800 3.2e-20 102.1 124 50.0
FAN06G4364 Fragaria x ananassa HOM05D004595 ORTHO05D005800 3.2e-20 102.1 129 48.1
RcHm_v2.0_Chr1g0348071 Rosa chinensis HOM05D004595 ORTHO05D005800 3.2e-20 102.1 124 48.4
ClCG06G002450 Citrullus lanatus HOM05D004595 ORTHO05D005800 4.2e-20 101.7 123 45.5
FAN10G2859 Fragaria x ananassa HOM05D004595 ORTHO05D005800 4.2e-20 101.7 124 49.2
Carub.0007s2444 Capsella rubella HOM05D004595 ORTHO05D005800 5.5e-20 101.3 124 48.4
Hund14485 Selenicereus undatus HOM05D004595 ORTHO05D005800 7.2e-20 100.9 124 45.2
FAN01G2950 Fragaria x ananassa HOM05D004595 ORTHO05D005800 1.2e-19 100.1 124 49.2
HanXRQChr13g0418201 Helianthus annuus HOM05D004595 ORTHO05D005800 1.2e-19 100.1 124 51.6
AUR62018854 Chenopodium quinoa HOM05D004595 ORTHO05D005800 1.6e-19 99.8 124 46.0
Aa31LG2G13050 Aethionema arabicum HOM05D004595 ORTHO05D005800 4.7e-19 98.2 125 48.8
Thhalv10024346m.g Eutrema salsugineum HOM05D004595 ORTHO05D005800 3.0e-18 95.5 124 46.8
Lsat_1_v5_gn_6_93760 Lactuca sativa HOM05D004595 ORTHO05D005800 3.0e-18 95.5 124 47.6
CANSAT25G1576 Cannabis sativa HOM05D004595 ORTHO05D005800 5.2e-18 94.7 123 45.5
Lalb_Chr12g0210541 Lupinus albus HOM05D004595 ORTHO05D005800 2.0e-17 92.8 127 47.2
CARHR290510 Cardamine hirsuta HOM05D004595 ORTHO05D005800 3.4e-17 92.0 99 51.5
MD07G1109800 Malus domestica HOM05D004595 ORTHO05D005800 3.4e-17 92.0 124 46.0
arahy.Tifrunner.gnm1.ann1.F9ZABX Arachis hypogaea HOM05D004595 ORTHO05D005800 7.5e-17 90.9 128 45.3
arahy.Tifrunner.gnm1.ann1.XA3BYX Arachis hypogaea HOM05D004595 ORTHO05D005800 7.5e-17 90.9 128 45.3
ATR0665G378 Amborella trichopoda HOM05D004595 ORTHO05D005800 1.3e-16 90.1 130 46.2
A01p20330 Brassica napus HOM05D004595 ORTHO05D005800 1.7e-16 89.7 124 42.7
BraA01t01963Z Brassica rapa HOM05D004595 ORTHO05D005800 1.7e-16 89.7 124 42.7
C01p25500 Brassica napus HOM05D004595 ORTHO05D005800 3.7e-16 88.6 124 42.7
BolC1t02501H Brassica oleracea HOM05D004595 ORTHO05D005800 3.7e-16 88.6 124 42.7
CsaV3_6G008680 Cucumis sativus L. HOM05D004595 ORTHO05D005800 6.3e-16 87.8 123 41.5
BcaNung00138 Brassica carinata HOM05D004595 ORTHO05D005800 8.3e-16 87.4 124 41.9
Lj3g0024575 Lotus japonicus HOM05D004595 ORTHO05D005800 2.4e-15 85.9 125 45.6
Medtr8g007150 Medicago truncatula HOM05D004595 ORTHO05D005800 3.1e-15 85.5 133 45.1
FAN10G2341 Fragaria x ananassa HOM05D004595 ORTHO05D005800 4.1e-15 85.1 138 43.5
BcaC09g50431 Brassica carinata HOM05D004595 ORTHO05D005800 1.6e-14 83.2 138 39.1
Glyma.07G115800 Glycine max HOM05D004595 ORTHO05D005800 2.0e-14 82.8 126 46.0
Glyma.03G109300 Glycine max HOM05D004595 ORTHO05D005800 2.7e-14 82.4 126 42.9
Ca_14806_v3 Cicer arietinum L. HOM05D004595 ORTHO05D005800 1.7e-13 79.7 134 42.5
Psat4g223720 Pisum sativum HOM05D004595 ORTHO05D005800 5.0e-13 78.2 124 41.9
CANSAT21G2067 Cannabis sativa HOM05D005656 ORTHO05D007094 6.5e-13 77.8 37 86.5
Phvul.010G046800 Phaseolus vulgaris HOM05D004595 ORTHO05D005800 1.5e-12 76.6 126 40.5
VMungo0331G1450 Vigna mungo HOM05D004595 ORTHO05D005800 3.2e-12 75.5 126 44.4
Os10g0563500 Oryza sativa ssp. japonica HOM05D004595 ORTHO05D005800 9.4e-12 73.9 101 48.5
Ciclev10018937m.g Citrus clementina HOM05D004595 ORTHO05D005800 2.7e-11 72.4 123 39.0
TPR.G32121 Trifolium pratense HOM05D004595 ORTHO05D009144 2.7e-11 72.4 36 86.1
TPR.G32138 Trifolium pratense HOM05D004595 ORTHO05D005800 2.7e-11 72.4 36 86.1
Zm00001eb391030 Zea mays HOM05D004595 ORTHO05D005800 1.8e-10 69.7 36 80.6
CARHR223550 Cardamine hirsuta HOM05D004595 ORTHO05D005800 9.8e-09 63.9 30 90.0
DCAR_005580 Daucus carota HOM05D004595 ORTHO05D005800 2.2e-08 62.8 30 86.7
SHI20407 Sapria himalayana HOM05D004595 ORTHO05D005800 2.2e-08 62.8 30 86.7
GSVIVG01005722001 Vitis vinifera HOM05D004595 ORTHO05D005800 3.7e-08 62.0 30 93.3
Zm00001eb023800 Zea mays HOM05D004595 ORTHO05D005800 2.4e-07 59.3 29 86.2
Pp3c24_4600 Physcomitrium patens HOM05D004595 ORTHO05D005800 1.2e-06 57.0 83 43.4


User provided reference genes

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