Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000508 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 3.9e-58 228.0 123 100.0
CSS0037944 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 2.5e-41 172.2 121 80.2
Actinidia24746 Actinidia chinensis HOM05D006672 ORTHO05D007769 3.1e-23 112.1 137 56.2
Dinv30493 Davidia involucrata HOM05D006672 ORTHO05D007769 4.6e-19 98.2 101 62.4
Actinidia08988 Actinidia chinensis HOM05D000726 ORTHO05D007769 4.3e-17 91.7 134 50.7
Rhsim12G0199700 Rhododendron simsii HOM05D006672 ORTHO05D007769 3.7e-16 88.6 155 47.1
Gohir.D05G130600 Gossypium hirsutum HOM05D006672 ORTHO05D007769 9.1e-15 84.0 127 49.6
Gorai.009G134300 Gossypium raimondii HOM05D006672 ORTHO05D007769 9.1e-15 84.0 127 48.8
Nitab4.5_0001315g0240 Nicotiana tabacum HOM05D006672 ORTHO05D007769 9.1e-15 84.0 163 47.9
FvH4_6g31600 Fragaria vesca HOM05D006672 ORTHO05D007769 2.0e-14 82.8 150 42.7
Glyma.08G205200 Glycine max HOM05D006672 ORTHO05D007769 2.0e-14 82.8 155 45.2
FAN09G1670 Fragaria x ananassa HOM05D006672 ORTHO05D007769 2.6e-14 82.4 150 42.7
Gohir.A05G131200 Gossypium hirsutum HOM05D006672 ORTHO05D007769 4.5e-14 81.6 127 44.9
AUR62011637 Chenopodium quinoa HOM05D006672 ORTHO05D007769 5.9e-14 81.3 119 50.4
COL.COLO4_30405 Corchorus olitorius HOM05D006672 ORTHO05D007769 5.9e-14 81.3 166 43.4
TWI12G1441 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 7.7e-14 80.9 165 41.8
MSTRG.22671 Avicennia marina HOM05D006672 ORTHO05D007769 1.0e-13 80.5 144 45.1
Ca_20375_v3 Cicer arietinum L. HOM05D006672 ORTHO05D007769 1.0e-13 80.5 110 51.8
Migut.D01021 Erythranthe guttata HOM05D006672 ORTHO05D007769 1.7e-13 79.7 98 55.1
Oeu040367.1 Olea europaea HOM05D006672 ORTHO05D007769 1.7e-13 79.7 104 54.8
Nitab4.5_0008314g0010 Nicotiana tabacum HOM05D006672 ORTHO05D007769 2.2e-13 79.3 111 51.4
TPR.G17666 Trifolium pratense HOM05D006672 ORTHO05D007769 3.8e-13 78.6 124 46.8
vmacro16964 Vaccinium macrocarpon HOM05D006672 ORTHO05D007769 3.8e-13 78.6 175 42.3
FAN05G5736 Fragaria x ananassa HOM05D006672 ORTHO05D007769 5.0e-13 78.2 144 41.7
Lj3g0012066 Lotus japonicus HOM05D006672 ORTHO05D007769 5.0e-13 78.2 141 46.1
Potri.003G053500 Populus trichocarpa HOM05D006672 ORTHO05D007769 5.0e-13 78.2 157 42.7
Atru.chr1.3318 Acer truncatum HOM05D006672 ORTHO05D007769 6.5e-13 77.8 132 46.2
FAN14G5379 Fragaria x ananassa HOM05D006672 ORTHO05D007769 6.5e-13 77.8 141 44.0
Hma1.2p1_2022F.1_g311340 Hydrangea macrophylla HOM05D006672 ORTHO05D007769 6.5e-13 77.8 131 47.3
AUR62016468 Chenopodium quinoa HOM05D006672 ORTHO05D007769 8.5e-13 77.4 120 49.2
TAR636G2852 Trochodendron aralioides HOM05D006672 ORTHO05D007769 8.5e-13 77.4 97 52.6
Psat7g250280 Pisum sativum HOM05D006672 ORTHO05D007769 1.4e-12 76.6 122 47.5
MBI04_g22016_MAGBIO Magnolia biondii HOM05D006672 ORTHO05D007769 3.2e-12 75.5 164 45.7
Peaxi162Scf00015g00013 Petunia axillaris HOM05D006672 ORTHO05D007769 3.2e-12 75.5 89 56.2
Sp1g13550 Schrenkiella parvula HOM05D006672 ORTHO05D007769 4.2e-12 75.1 155 42.6
Solyc03g120740.1 Solanum lycopersicum HOM05D006672 ORTHO05D007769 4.2e-12 75.1 160 41.9
Cc04_g03140 Coffea canephora HOM05D006672 ORTHO05D007769 5.5e-12 74.7 132 49.2
VMungo0331G0342 Vigna mungo HOM05D006672 ORTHO05D007769 5.5e-12 74.7 108 50.0
SalBow1G8254 Salvia bowleyana HOM05D000380 ORTHO05D000561 7.2e-12 74.3 156 44.2
Carub.0001s1499 Capsella rubella HOM05D006672 ORTHO05D007769 9.4e-12 73.9 136 41.9
HanXRQChr10g0313401 Helianthus annuus HOM05D006672 ORTHO05D007769 9.4e-12 73.9 163 41.7
Phvul.010G149100 Phaseolus vulgaris HOM05D006672 ORTHO05D007769 1.2e-11 73.6 165 40.0
arahy.Tifrunner.gnm1.ann1.N61AC9 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.6e-11 73.2 125 44.8
arahy.Tifrunner.gnm1.ann1.ZTP7X5 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.1e-11 72.8 103 50.5
CARHR015760 Cardamine hirsuta HOM05D006672 ORTHO05D007769 2.1e-11 72.8 143 43.4
Sopen03g039560 Solanum pennellii HOM05D006672 ORTHO05D007769 2.1e-11 72.8 162 41.4
Thecc.06G091100 Theobroma cacao HOM05D006672 ORTHO05D007769 2.1e-11 72.8 169 40.8
Ciclev10026595m.g Citrus clementina HOM05D006672 ORTHO05D007769 2.7e-11 72.4 101 53.5
TWI75G0771 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 2.7e-11 72.4 161 40.4
AT1G15230 Arabidopsis thaliana HOM05D006672 ORTHO05D007769 3.6e-11 72.0 145 42.8
A06p11230 Brassica napus HOM05D006672 ORTHO05D007769 3.6e-11 72.0 140 42.9
Manes.04G128475 Manihot esculenta HOM05D006672 ORTHO05D007769 3.6e-11 72.0 167 43.7
BcaC05g25452 Brassica carinata HOM05D006672 ORTHO05D007769 4.7e-11 71.6 143 42.7
C05p13360 Brassica napus HOM05D006672 ORTHO05D007769 4.7e-11 71.6 143 42.7
BraA06t24303Z Brassica rapa HOM05D006672 ORTHO05D007769 6.1e-11 71.2 148 41.2
ECA234G2073 Erigeron canadensis HOM05D006672 ORTHO05D007769 6.1e-11 71.2 165 41.8
Medtr4g012950 Medicago truncatula HOM05D006672 ORTHO05D007769 6.1e-11 71.2 90 52.2
Ah.01g021520 Amaranthus hybridus HOM05D006672 ORTHO05D007769 7.9e-11 70.9 161 42.9
arahy.Tifrunner.gnm1.ann1.HW7XL7 Arachis hypogaea HOM05D006672 ORTHO05D007769 7.9e-11 70.9 127 45.7
BolC5t30073H Brassica oleracea HOM05D006672 ORTHO05D007769 7.9e-11 70.9 145 43.4
Sabra03G0029900 Salix brachista HOM05D006672 ORTHO05D007769 7.9e-11 70.9 157 40.8
Duzib160G0370 Durio zibethinus HOM05D000726 ORTHO05D007769 1.0e-10 70.5 151 41.1
EL10Ac9g22019 Beta vulgaris HOM05D000202 ORTHO05D000117 1.4e-10 70.1 152 44.1
BcaC05g25464 Brassica carinata HOM05D006672 ORTHO05D007769 1.4e-10 70.1 138 43.5
QL05p022164 Quercus lobata HOM05D006672 ORTHO05D007769 1.4e-10 70.1 65 63.1
Duzib235G0275 Durio zibethinus HOM05D006672 ORTHO05D007769 1.8e-10 69.7 77 54.5
Aa31LG7G40 Aethionema arabicum HOM05D006672 ORTHO05D007769 2.3e-10 69.3 118 48.3
arahy.Tifrunner.gnm1.ann1.HQ5KA8 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.3e-10 69.3 97 48.5
DCAR_026329 Daucus carota HOM05D006672 ORTHO05D007769 2.3e-10 69.3 150 41.3
PGSC0003DMG400040414 Solanum tuberosum HOM05D006672 ORTHO05D007769 2.3e-10 69.3 167 38.3
THA.LOC104800426 Tarenaya hassleriana HOM05D006672 ORTHO05D007769 2.3e-10 69.3 127 42.5
arahy.Tifrunner.gnm1.ann1.K72DJ3 Arachis hypogaea HOM05D006672 ORTHO05D007769 3.0e-10 68.9 58 65.5
Medtr0206s0010 Medicago truncatula HOM05D006672 ORTHO05D007769 3.0e-10 68.9 123 46.3
AL1G27320 Arabidopsis lyrata HOM05D006672 ORTHO05D007769 3.9e-10 68.6 144 44.4
CsaV3_3G025030 Cucumis sativus L. HOM05D006672 ORTHO05D007769 5.1e-10 68.2 122 46.7
Lalb_Chr25g0279941 Lupinus albus HOM05D006672 ORTHO05D007769 5.1e-10 68.2 111 45.0
SGA_v2.0_scaffold4G02004 Striga asiatica HOM05D006672 ORTHO05D007769 5.1e-10 68.2 159 41.5
CiPaw.02G149600 Carya illinoinensis HOM05D006672 ORTHO05D007769 6.7e-10 67.8 85 56.5
ClCG07G013120 Citrullus lanatus HOM05D006672 ORTHO05D007769 1.1e-09 67.0 128 44.5
DCAR_022631 Daucus carota HOM05D006672 ORTHO05D007769 1.1e-09 67.0 149 41.6
arahy.Tifrunner.gnm1.ann1.C7681Z Arachis hypogaea HOM05D006672 ORTHO05D007769 1.5e-09 66.6 132 43.2
BcaC05g25462 Brassica carinata HOM05D006672 ORTHO05D007769 1.5e-09 66.6 128 43.0
Haze_12408 Corylus avellana HOM05D006672 ORTHO05D007769 1.5e-09 66.6 59 66.1
RcHm_v2.0_Chr2g0138661 Rosa chinensis HOM05D006672 ORTHO05D007769 1.5e-09 66.6 147 42.9
MELO3C012968.2 Cucumis melo HOM05D006672 ORTHO05D007769 3.3e-09 65.5 132 43.2
Cfa009362 Carpinus fangiana HOM05D006672 ORTHO05D007769 4.4e-09 65.1 152 42.1
Thhalv10008936m.g Eutrema salsugineum HOM05D006672 ORTHO05D007769 5.7e-09 64.7 148 40.5
Prupe.3G068600 Prunus persica HOM05D006672 ORTHO05D007769 5.7e-09 64.7 90 51.1
arahy.Tifrunner.gnm1.ann1.QF27IC Arachis hypogaea HOM05D006672 ORTHO05D007769 9.7e-09 63.9 132 43.2
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 9.7e-09 63.9 129 41.9
PGR102G0682 Punica granatum HOM05D006672 ORTHO05D007769 3.7e-08 62.0 125 43.2
SGA_v2.0_scaffold5G02564 Striga asiatica HOM05D000085 ORTHO05D000274 3.7e-08 62.0 105 44.8
Nn8g39154 Nelumbo nucifera HOM05D006672 ORTHO05D007769 4.8e-08 61.6 81 53.1
Sed0005168 Sechium edule HOM05D006672 ORTHO05D007769 8.2e-08 60.8 118 43.2
MD17G1192500 Malus domestica HOM05D006672 ORTHO05D007769 1.8e-07 59.7 120 40.8
Lsat_1_v5_gn_5_130661 Lactuca sativa HOM05D006672 ORTHO05D007769 5.3e-07 58.2 137 39.4
Zm00001eb098380 Zea mays HOM05D006672 ORTHO05D007769 5.3e-07 58.2 74 51.4
arahy.Tifrunner.gnm1.ann1.07RGV5 Arachis hypogaea HOM05D006672 ORTHO05D007769 7.0e-07 57.8 160 37.5
Os09g0344700 Oryza sativa ssp. japonica HOM05D006672 ORTHO05D007769 7.0e-07 57.8 45 68.9
PSO782G0352 Papaver somniferum HOM05D006672 ORTHO05D007769 7.0e-07 57.8 125 40.8
arahy.Tifrunner.gnm1.ann1.MVJ1PZ Arachis hypogaea HOM05D006672 ORTHO05D007769 9.1e-07 57.4 154 40.9
Rhsim06G0080600 Rhododendron simsii HOM05D006672 ORTHO05D007769 1.2e-06 57.0 73 50.7
Sc12g0009390 Simmondsia chinensis HOM05D006672 ORTHO05D007769 1.2e-06 57.0 104 47.1
unitig_899.g14774 Utricularia gibba HOM05D006672 ORTHO05D007769 1.2e-06 57.0 108 41.7
CANSAT56G0062 Cannabis sativa HOM05D006672 ORTHO05D007769 2.0e-06 56.2 152 41.4
Lsat_1_v5_gn_4_162060 Lactuca sativa HOM05D006672 ORTHO05D007769 2.0e-06 56.2 44 70.5
Lsat_1_v5_gn_5_130640 Lactuca sativa HOM05D006672 ORTHO05D007769 2.6e-06 55.8 60 58.3
PSO832G0654 Papaver somniferum HOM05D006672 ORTHO05D007769 2.6e-06 55.8 124 37.9
Lsat_1_v5_gn_2_34400 Lactuca sativa HOM05D008424 ORTHO05D007769 3.4e-06 55.5 169 35.5
Lsat_1_v5_gn_5_130760 Lactuca sativa HOM05D006672 ORTHO05D007769 3.4e-06 55.5 130 39.2
HPP92_005483 Vanilla planifolia HOM05D006672 ORTHO05D007769 7.7e-06 54.3 62 56.5


User provided reference genes

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