Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 6.5e-152 540.8 295 100.0
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.0e-136 490.3 325 87.4
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 3.5e-81 305.8 309 62.1
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 7.8e-81 304.7 296 62.2
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 7.3e-79 298.1 237 71.3
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 2.4e-77 293.1 289 60.9
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 9.0e-77 291.2 290 62.1
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 1.7e-75 287.0 191 79.6
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 3.8e-75 285.8 218 71.6
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 1.9e-74 283.5 219 72.1
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 1.9e-74 283.5 201 76.1
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 3.2e-74 282.7 240 66.7
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 1.2e-73 280.8 200 76.0
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 1.6e-73 280.4 206 74.3
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 2.1e-73 280.0 242 66.9
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 2.1e-73 280.0 203 74.4
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 3.5e-73 279.3 219 71.2
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 4.6e-73 278.9 203 73.9
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 4.6e-73 278.9 200 76.5
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 7.8e-73 278.1 230 68.7
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 1.0e-72 277.7 242 65.7
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 2.3e-72 276.6 189 77.2
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 3.0e-72 276.2 199 74.9
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 5.1e-72 275.4 200 75.0
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 5.1e-72 275.4 236 68.6
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 8.7e-72 274.6 206 73.3
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 8.7e-72 274.6 199 75.4
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.1e-71 274.2 239 66.5
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.9e-71 273.5 209 72.7
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 1.9e-71 273.5 209 72.7
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 2.5e-71 273.1 200 75.0
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 5.6e-71 271.9 209 72.2
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 7.3e-71 271.6 200 73.5
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 7.3e-71 271.6 200 73.5
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 7.3e-71 271.6 200 73.5
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 7.3e-71 271.6 199 72.9
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 9.6e-71 271.2 238 66.0
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 1.3e-70 270.8 188 78.2
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 2.1e-70 270.0 193 75.6
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 2.8e-70 269.6 197 73.1
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 3.6e-70 269.2 202 72.8
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 4.8e-70 268.9 203 73.4
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 4.8e-70 268.9 203 73.4
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 8.1e-70 268.1 222 67.1
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 8.1e-70 268.1 193 75.6
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 1.1e-69 267.7 204 73.0
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 1.8e-69 266.9 241 65.1
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 1.8e-69 266.9 200 74.5
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 1.8e-69 266.9 242 65.7
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 1.8e-69 266.9 200 73.0
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 2.4e-69 266.5 236 64.0
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 4.0e-69 265.8 229 66.8
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 4.0e-69 265.8 236 66.1
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 5.3e-69 265.4 207 71.5
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 6.9e-69 265.0 201 72.1
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 1.2e-68 264.2 193 76.7
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.5e-68 263.8 194 72.7
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 2.0e-68 263.5 194 73.2
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 2.6e-68 263.1 242 64.5
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 2.6e-68 263.1 200 70.0
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 2.6e-68 263.1 207 71.0
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 2.6e-68 263.1 211 69.7
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 3.4e-68 262.7 201 73.1
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 4.5e-68 262.3 209 69.4
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 7.6e-68 261.5 242 62.4
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 7.6e-68 261.5 238 64.7
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 7.6e-68 261.5 201 72.6
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 9.9e-68 261.2 200 71.0
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 1.3e-67 260.8 189 74.1
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.7e-67 260.4 200 71.0
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 1.7e-67 260.4 238 64.3
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 3.8e-67 259.2 201 72.1
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 4.9e-67 258.8 216 66.7
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 4.9e-67 258.8 186 72.0
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 6.4e-67 258.5 201 71.6
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 6.4e-67 258.5 201 71.6
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 6.4e-67 258.5 208 66.8
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 8.4e-67 258.1 200 69.5
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 8.4e-67 258.1 239 61.9
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 1.1e-66 257.7 204 70.1
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 1.9e-66 256.9 198 71.7
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 2.4e-66 256.5 226 64.2
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 2.4e-66 256.5 241 63.1
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 3.2e-66 256.1 200 71.0
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 4.2e-66 255.8 199 70.4
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 4.2e-66 255.8 193 74.1
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 1.2e-65 254.2 236 62.3
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 1.6e-65 253.8 199 70.4
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 1.6e-65 253.8 198 72.7
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 2.7e-65 253.1 199 69.3
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 6.0e-65 251.9 261 60.2
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 2.3e-64 250.0 187 71.7
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 3.9e-64 249.2 207 66.7
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 3.9e-64 249.2 200 67.5
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 8.7e-64 248.1 207 67.1
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 7.4e-63 245.0 210 65.2
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 9.6e-63 244.6 192 70.3
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 3.7e-62 242.7 196 67.9
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 4.0e-61 239.2 201 66.2
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 1.3e-56 224.2 201 60.7
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 8.7e-56 221.5 159 74.2
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 1.1e-55 221.1 259 54.4
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 1.6e-54 217.2 200 63.0
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 1.6e-54 217.2 191 61.8
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 1.5e-52 210.7 227 56.8
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 4.6e-49 199.1 147 74.8
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 2.5e-47 193.4 201 53.7
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 3.3e-47 193.0 146 69.2
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 2.9e-43 179.9 148 66.9
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 2.7e-41 173.3 198 56.1
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 1.5e-39 167.5 202 49.0
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 3.8e-35 152.9 110 72.7
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 5.0e-35 152.5 132 62.9
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 8.5e-35 151.8 171 55.6
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.6e-33 147.5 110 68.2
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 1.4e-32 144.4 185 46.5
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 2.7e-25 120.2 230 36.5
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.1e-23 114.8 98 68.4
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.1e-18 98.2 78 62.8
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 1.1e-13 81.6 49 77.6
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 5.9e-12 75.9 105 48.6
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 9.4e-10 68.6 71 54.9
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 3.7e-06 56.6 41 61.0
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 4.8e-06 56.2 88 44.3


User provided reference genes

Program Settings