Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 0.0e+00 1704.5 868 100.0
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 0.0e+00 1638.2 935 91.8
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 4.5e-294 1014.6 623 84.4
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.5e-292 1009.6 627 85.0
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 2.0e-289 999.2 624 84.0
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 1.1e-276 956.8 631 80.0
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 4.4e-273 944.9 630 79.4
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.0e-269 933.7 592 82.9
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.3e-269 933.3 625 77.8
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 8.9e-266 920.6 632 75.6
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.2e-265 920.2 624 77.9
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 3.7e-264 915.2 623 77.7
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.6e-262 909.8 644 76.1
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 3.5e-262 908.7 633 75.4
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.9e-260 902.9 634 76.3
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.6e-259 899.8 626 76.4
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 2.1e-259 899.4 614 77.5
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 8.0e-259 897.5 645 74.9
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 8.0e-259 897.5 626 76.0
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.0e-258 897.1 634 74.9
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 1.8e-258 896.3 635 75.9
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 6.8e-258 894.4 645 74.6
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 1.2e-257 893.6 634 74.8
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.9e-256 889.0 601 79.0
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 2.9e-256 889.0 645 74.3
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 3.7e-256 888.6 639 74.8
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 2.4e-255 885.9 659 73.0
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 3.2e-255 885.6 640 74.5
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 3.2e-255 885.6 645 74.4
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 1.2e-254 883.6 634 74.8
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 3.5e-254 882.1 638 73.2
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 7.8e-254 880.9 654 72.2
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.0e-253 880.6 636 73.9
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 1.3e-253 880.2 644 73.9
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 3.0e-253 879.0 637 74.4
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 3.0e-253 879.0 637 74.4
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 3.0e-253 879.0 622 75.9
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 7.3e-252 874.4 659 72.4
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 4.7e-251 871.7 635 73.1
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 8.1e-251 870.9 642 72.6
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 1.1e-250 870.5 632 74.5
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.1e-250 870.5 639 72.9
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 1.4e-250 870.2 646 72.1
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 1.8e-250 869.8 639 72.9
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 3.1e-250 869.0 637 73.5
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 5.2e-250 868.2 645 72.1
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 8.9e-250 867.5 645 72.2
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 8.9e-250 867.5 636 73.1
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.2e-249 867.1 634 73.5
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 1.2e-249 867.1 646 72.4
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.6e-249 865.9 637 72.5
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.4e-249 865.1 647 71.9
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 9.8e-249 864.0 647 71.7
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 2.9e-248 862.4 649 72.1
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 2.9e-248 862.4 635 72.9
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 3.7e-248 862.1 648 72.7
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 4.9e-248 861.7 635 72.6
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 6.4e-248 861.3 635 72.4
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 1.4e-247 860.1 635 72.4
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.1e-247 858.6 641 72.4
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 9.2e-247 857.4 640 71.6
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.2e-246 857.1 636 72.3
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 1.6e-246 856.7 633 73.3
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 7.8e-246 854.4 633 73.0
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 2.3e-245 852.8 635 72.6
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 8.6e-245 850.9 646 71.4
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.5e-244 850.1 630 73.2
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 3.3e-244 849.0 639 71.2
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 4.3e-244 848.6 648 70.8
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 4.3e-244 848.6 650 70.9
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 7.3e-244 847.8 647 70.2
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 7.3e-244 847.8 637 69.9
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 3.6e-243 845.5 649 71.3
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.5e-241 840.1 632 71.2
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 2.6e-241 839.3 631 71.9
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 4.9e-240 835.1 642 70.6
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.0e-237 827.4 648 69.8
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 6.6e-237 824.7 637 70.2
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.9e-236 823.2 529 82.4
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 1.6e-235 820.1 634 69.1
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 8.9e-234 814.3 651 68.0
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 4.9e-232 808.5 642 67.9
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 6.4e-232 808.1 644 68.3
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 8.4e-232 807.7 650 67.7
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 7.1e-231 804.7 648 67.4
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.1e-231 804.7 633 67.8
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 6.0e-230 801.6 646 67.6
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 1.0e-229 800.8 649 67.2
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 1.7e-229 800.0 651 67.0
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 2.3e-229 799.7 576 73.6
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 3.0e-229 799.3 653 66.8
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 3.0e-229 799.3 650 66.9
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.1e-228 797.3 647 67.2
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 1.1e-228 797.3 643 67.2
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 1.5e-228 797.0 653 66.6
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 1.5e-228 797.0 652 66.7
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 2.5e-228 796.2 650 66.5
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 5.6e-228 795.0 650 66.9
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 5.6e-228 795.0 655 66.3
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 4.8e-227 792.0 638 68.5
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 4.8e-227 792.0 639 68.1
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.1e-226 790.8 636 67.3
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 6.4e-224 781.6 640 66.2
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.0e-221 774.2 643 65.9
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.3e-221 773.1 643 65.9
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 2.5e-220 769.6 653 65.2
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 2.5e-220 769.6 641 66.0
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 4.9e-216 755.4 643 66.3
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.1e-215 751.5 628 64.2
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 3.7e-211 739.2 626 62.5
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 3.4e-209 732.6 631 66.1
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.3e-205 719.9 637 64.5
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 3.0e-205 719.5 625 62.9
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 1.2e-201 707.6 624 61.2
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.9e-200 703.0 621 63.3
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 8.5e-192 674.9 643 58.5
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 7.2e-191 671.8 646 58.4
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.4e-165 587.8 613 56.4
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 4.0e-165 586.3 631 54.7
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.5e-159 565.8 542 59.6
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 1.3e-144 518.1 636 49.4
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 2.5e-143 513.8 613 52.4
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.5e-140 504.6 647 47.8
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 2.2e-123 447.6 663 42.8
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.5e-111 407.5 332 66.6
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 1.6e-110 404.8 334 68.6
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 4.5e-100 370.2 385 53.2
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 5.0e-83 313.5 233 69.1
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 3.7e-62 244.2 345 47.5
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.9e-42 178.7 118 82.2
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 8.3e-38 163.3 565 29.6
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 1.8e-37 162.2 118 66.9
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 4.1e-37 161.0 102 73.5
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 4.1e-37 161.0 102 73.5
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 6.0e-20 104.0 115 51.3
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.1e-16 93.2 88 58.0
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 1.6e-12 79.3 98 46.9
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.3e-11 75.5 55 58.2
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.8e-08 65.9 44 68.2
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 2.4e-08 65.5 46 63.0
Rhsim02G0109200 Rhododendron simsii HOM05D016402 ORTHO05D016246 6.8e-08 63.9 109 29.4


User provided reference genes

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