Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.1e-65 253.1 125 100.0
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.1e-65 253.1 125 100.0
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 6.1e-59 230.7 125 90.4
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 4.8e-56 221.1 123 87.8
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 2.4e-55 218.8 123 88.6
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 2.9e-53 211.8 125 82.4
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 5.0e-53 211.1 125 82.4
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 8.5e-53 210.3 124 82.3
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 8.5e-53 210.3 118 87.3
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 5.5e-52 207.6 125 84.0
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 5.5e-52 207.6 118 85.6
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 2.1e-51 205.7 125 80.0
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 6.1e-51 204.1 124 79.0
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 6.1e-51 204.1 124 79.0
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 8.0e-51 203.8 123 80.5
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 1.8e-50 202.6 125 80.0
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 1.2e-49 199.9 120 80.0
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 3.3e-49 198.4 125 77.6
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 3.3e-49 198.4 125 76.8
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 5.7e-49 197.6 125 76.0
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 5.7e-49 197.6 118 80.5
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 7.5e-49 197.2 123 78.0
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 9.7e-49 196.8 123 78.0
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 2.8e-48 195.3 125 76.8
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 8.2e-48 193.7 125 76.8
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 8.2e-48 193.7 118 79.7
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 8.2e-48 193.7 125 77.6
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 2.4e-47 192.2 123 75.6
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 4.1e-47 191.4 118 78.0
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 4.1e-47 191.4 120 77.5
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 9.1e-47 190.3 125 72.8
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 9.1e-47 190.3 125 73.6
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 9.1e-47 190.3 118 79.7
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 2.0e-46 189.1 123 76.4
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 2.0e-46 189.1 118 75.4
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 2.0e-46 189.1 125 70.4
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 2.7e-46 188.7 125 73.6
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 3.5e-46 188.3 118 78.0
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 4.5e-46 188.0 125 73.6
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 4.5e-46 188.0 125 75.2
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 4.5e-46 188.0 125 74.4
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 5.9e-46 187.6 118 77.1
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 5.9e-46 187.6 118 77.1
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 5.9e-46 187.6 125 71.2
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 1.0e-45 186.8 125 72.0
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.0e-45 186.8 118 77.1
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.0e-45 186.8 118 77.1
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 1.0e-45 186.8 120 75.8
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 1.3e-45 186.4 124 72.6
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 2.2e-45 185.7 125 72.8
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 2.9e-45 185.3 125 74.4
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 3.8e-45 184.9 125 72.8
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 3.8e-45 184.9 125 70.4
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 3.8e-45 184.9 122 73.8
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 5.0e-45 184.5 118 75.4
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 6.5e-45 184.1 118 75.4
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 6.5e-45 184.1 123 73.2
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 1.1e-44 183.3 123 73.2
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 1.1e-44 183.3 124 73.4
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 1.5e-44 183.0 125 72.0
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 1.5e-44 183.0 123 72.4
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 1.9e-44 182.6 125 72.0
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 1.9e-44 182.6 125 72.0
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 1.9e-44 182.6 125 72.0
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 1.9e-44 182.6 125 72.0
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 1.9e-44 182.6 142 66.9
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 1.9e-44 182.6 123 71.5
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 2.5e-44 182.2 125 72.0
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 2.5e-44 182.2 125 72.0
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 2.5e-44 182.2 125 72.0
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.5e-44 182.2 116 76.7
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 2.5e-44 182.2 105 83.8
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 3.2e-44 181.8 118 73.7
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 4.2e-44 181.4 125 72.0
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 4.2e-44 181.4 118 73.7
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 7.2e-44 180.6 123 71.5
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.2e-43 179.9 105 83.8
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 1.6e-43 179.5 118 75.4
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 2.1e-43 179.1 117 72.6
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 3.6e-43 178.3 118 75.4
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 1.4e-42 176.4 125 70.4
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 1.4e-42 176.4 118 74.6
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 2.3e-42 175.6 111 77.5
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 3.0e-42 175.3 113 77.9
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 5.2e-42 174.5 147 61.2
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 6.8e-42 174.1 105 79.0
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 8.8e-42 173.7 120 70.0
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 2.6e-41 172.2 118 70.3
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 9.8e-41 170.2 122 68.9
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 1.3e-40 169.9 145 60.7
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 3.7e-40 168.3 118 66.9
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 4.8e-40 167.9 120 70.8
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 8.3e-40 167.2 106 77.4
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 1.4e-39 166.4 108 75.9
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 4.1e-39 164.9 123 65.9
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 7.0e-39 164.1 135 63.7
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 7.0e-39 164.1 100 78.0
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 1.2e-38 163.3 128 66.4
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 4.5e-38 161.4 113 69.9
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 1.0e-37 160.2 123 67.5
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 1.3e-37 159.8 100 77.0
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 2.9e-37 158.7 122 68.0
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 3.8e-37 158.3 130 65.4
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 5.0e-37 157.9 113 68.1
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 3.3e-36 155.2 217 44.7
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 1.6e-35 152.9 132 56.8
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 1.0e-34 150.2 125 62.4
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 1.8e-34 149.4 118 61.0
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 2.6e-33 145.6 107 69.2
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 4.4e-33 144.8 88 79.5
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 5.4e-31 137.9 101 62.4
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 9.2e-31 137.1 89 74.2
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 1.7e-29 132.9 115 63.5
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 2.9e-29 132.1 103 63.1
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 9.5e-28 127.1 81 77.8
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 2.0e-25 119.4 68 80.9
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 2.0e-25 119.4 74 79.7
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 3.7e-24 115.2 128 46.1
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 4.1e-23 111.7 74 71.6
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 9.2e-23 110.5 67 74.6
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 4.6e-22 108.2 86 57.0
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 2.3e-21 105.9 89 62.9
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 8.6e-21 104.0 173 40.5
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 4.7e-19 98.2 52 86.5
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 8.9e-18 94.0 117 39.3
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 4.4e-17 91.7 61 72.1
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 9.8e-17 90.5 70 62.9
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 2.5e-12 75.9 131 39.7
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 1.6e-11 73.2 46 67.4
MCO07G269 Micromonas commoda HOM05D006084 ORTHO05D007449 4.9e-08 61.6 103 32.0


User provided reference genes

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