Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000482 Camellia sinensis var. sinensis HOM05D008293 ORTHO05D010504 3.6e-269 931.0 472 100.0
Rhsim04G0025400 Rhododendron simsii HOM05D008293 ORTHO05D010504 4.1e-209 731.5 473 80.1
Dinv14981 Davidia involucrata HOM05D008293 ORTHO05D010504 4.7e-205 718.0 484 77.1
Actinidia18798 Actinidia chinensis HOM05D008293 ORTHO05D010504 3.1e-204 715.3 469 78.9
GSVIVG01014211001 Vitis vinifera HOM05D008293 ORTHO05D010504 1.2e-184 650.2 452 74.1
Hma1.2p1_2505F.1_g323420 Hydrangea macrophylla HOM05D008293 ORTHO05D010504 1.6e-184 649.8 424 77.4
TAR627G0720 Trochodendron aralioides HOM05D008293 ORTHO05D010504 2.7e-184 649.0 480 71.2
Nitab4.5_0000246g0170 Nicotiana tabacum HOM05D008293 ORTHO05D010504 1.3e-178 630.2 465 70.5
Thecc.07G109900 Theobroma cacao HOM05D008293 ORTHO05D010504 4.6e-176 621.7 470 68.7
Prupe.4G167100 Prunus persica HOM05D008293 ORTHO05D010504 1.9e-174 616.3 474 68.8
Nitab4.5_0001145g0060 Nicotiana tabacum HOM05D008293 ORTHO05D010504 7.4e-174 614.4 465 69.7
MD03G1241800 Malus domestica HOM05D008293 ORTHO05D010504 6.3e-173 611.3 457 69.1
Sopen07g030780 Solanum pennellii HOM05D008293 ORTHO05D010504 6.3e-173 611.3 464 68.5
QL08p026533 Quercus lobata HOM05D008293 ORTHO05D010504 3.1e-172 609.0 464 69.2
Atru.chr2.2164 Acer truncatum HOM05D008293 ORTHO05D010504 5.3e-172 608.2 428 72.7
PGSC0003DMG400012428 Solanum tuberosum HOM05D008293 ORTHO05D010504 5.3e-172 608.2 434 70.5
Peaxi162Scf00069g02232 Petunia axillaris HOM05D008293 ORTHO05D010504 1.3e-170 603.6 469 67.8
Migut.M00735 Erythranthe guttata HOM05D008293 ORTHO05D010504 7.2e-169 597.8 472 66.5
COL.COLO4_24863 Corchorus olitorius HOM05D008293 ORTHO05D010504 1.4e-167 593.6 463 67.2
CANSAT35G0405 Cannabis sativa HOM05D008293 ORTHO05D010504 1.9e-166 589.7 467 66.6
PSO782G2569 Papaver somniferum HOM05D008293 ORTHO05D010504 9.7e-166 587.4 479 65.1
CAN.G162.9 Capsicum annuum HOM05D008293 ORTHO05D010504 1.7e-165 586.6 418 71.3
Gohir.A13G148900 Gossypium hirsutum HOM05D008293 ORTHO05D010504 2.2e-162 576.2 463 63.5
Aqoxy4G00368 Aquilegia oxysepala HOM05D008293 ORTHO05D010504 2.9e-162 575.9 454 66.3
Haze_09337 Corylus avellana HOM05D008293 ORTHO05D010504 3.2e-161 572.4 477 65.4
Gohir.D13G153400 Gossypium hirsutum HOM05D008293 ORTHO05D010504 7.2e-161 571.2 466 62.9
Gorai.013G173300 Gossypium raimondii HOM05D008293 ORTHO05D010504 3.6e-160 568.9 468 63.0
PGR083G2613 Punica granatum HOM05D008293 ORTHO05D010504 1.0e-159 567.4 462 63.6
Ciclev10020583m.g Citrus clementina HOM05D008293 ORTHO05D010504 9.7e-150 534.3 386 71.5
HPP92_024759 Vanilla planifolia HOM05D008293 ORTHO05D010504 2.1e-144 516.5 431 61.5
Cc05_g11210 Coffea canephora HOM05D008293 ORTHO05D010504 2.7e-144 516.2 375 68.8
Nn1g09105 Nelumbo nucifera HOM05D008293 ORTHO05D010504 3.0e-143 512.7 476 58.8
AagrBONN_evm.TU.Sc2ySwM_344.4932 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.8e-140 503.4 477 55.3
Solyc07g062543.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 1.3e-138 497.3 349 70.8
Mapoly0032s0102 Marchantia polymorpha HOM05D008293 ORTHO05D010504 9.8e-134 481.1 427 58.1
Pp3c19_10600 Physcomitrium patens HOM05D008293 ORTHO05D010504 7.0e-132 474.9 432 55.1
SGA_v2.0_scaffold55G19705 Striga asiatica HOM05D008293 ORTHO05D010504 1.3e-130 470.7 445 57.5
Pp3c22_22050 Physcomitrium patens HOM05D008293 ORTHO05D010504 2.9e-130 469.5 432 55.1
SMO118G0404 Selaginella moellendorffii HOM05D008293 ORTHO05D010504 4.0e-127 459.1 469 54.6
RcHm_v2.0_Chr5g0030831 Rosa chinensis HOM05D008293 ORTHO05D010504 1.8e-119 433.7 341 63.6
Ciclev10023335m.g Citrus clementina HOM05D008293 ORTHO05D010504 9.8e-118 427.9 421 57.5
PRCOL_00003950 Prasinoderma coloniale HOM05D008293 ORTHO05D010504 2.6e-102 376.7 430 49.1
CBR_g40882 Chara braunii HOM05D008293 ORTHO05D010504 2.4e-100 370.2 427 49.2
Lj1A831T70 Lonicera japonica HOM05D008293 ORTHO05D010504 3.9e-98 362.8 256 73.4
RcHm_v2.0_Chr5g0031211 Rosa chinensis HOM05D008293 ORTHO05D010504 4.4e-94 349.4 358 54.5
SEGI_20639 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 1.1e-89 334.7 287 59.6
Cpa.g.sc97.100 Carica papaya HOM05D008293 ORTHO05D010504 1.4e-76 291.2 203 70.4
RcHm_v2.0_Chr7g0194341 Rosa chinensis HOM05D008293 ORTHO05D010504 6.7e-66 255.8 236 60.2
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 1.5e-62 244.6 188 68.1
RcHm_v2.0_Chr5g0031411 Rosa chinensis HOM05D008293 ORTHO05D010504 3.8e-61 240.0 222 57.2
Lj1P831T51 Lonicera japonica HOM05D008293 ORTHO05D010504 2.2e-56 224.2 180 68.9
Solyc07g062547.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 1.2e-54 218.4 177 66.1
Cfa019577 Carpinus fangiana HOM05D008293 ORTHO05D010504 1.6e-51 208.0 168 67.9
Ca_29004_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 7.9e-51 205.7 243 46.9
MD10G1199100 Malus domestica HOM05D008293 ORTHO05D010504 4.8e-40 169.9 172 52.9
AagrBONN_evm.TU.Sc2ySwM_344.893 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.1e-39 168.7 136 59.6
SEGI_30761 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 9.4e-36 155.6 146 52.7
Actinidia35215 Actinidia chinensis HOM05D008293 ORTHO05D010504 3.0e-34 150.6 293 41.0
Ca_29048_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 3.4e-17 94.0 103 43.7
Sopen06g001050 Solanum pennellii HOM05D008293 ORTHO05D023155 5.5e-12 76.6 86 51.2
SEGI_40959 Sequoiadendron giganteum HOM05D008293 ORTHO05D386060 4.7e-11 73.6 82 47.6
RcHm_v2.0_Chr5g0030641 Rosa chinensis HOM05D008293 ORTHO05D010504 2.3e-10 71.2 67 56.7


User provided reference genes

Program Settings