Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 5.7e-51 204.5 153 100.0
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 1.8e-20 103.2 72 72.2
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 3.2e-17 92.4 72 66.7
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 1.2e-16 90.5 62 74.2
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 6.6e-15 84.7 72 63.9
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 1.5e-14 83.6 72 62.5
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 9.5e-14 80.9 73 54.8
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 1.6e-13 80.1 72 56.9
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.1e-13 79.7 72 56.9
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.4e-12 77.0 72 56.9
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.8e-12 76.6 75 50.7
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.8e-12 76.6 75 50.7
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 8.9e-12 74.3 65 55.4
Actinidia15159 Actinidia chinensis HOM05D000043 ORTHO05D002577 1.5e-11 73.6 47 80.9
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 2.0e-11 73.2 65 53.8
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 3.4e-11 72.4 74 52.7
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 4.4e-11 72.0 69 53.6
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 4.4e-11 72.0 72 52.8
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 4.4e-11 72.0 72 54.2
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 7.6e-11 71.2 69 59.4
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 7.6e-11 71.2 72 51.4
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 7.6e-11 71.2 73 52.1
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 9.9e-11 70.9 74 51.4
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 9.9e-11 70.9 73 54.8
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 1.3e-10 70.5 72 55.6
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 1.7e-10 70.1 73 49.3
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 2.9e-10 69.3 46 67.4
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 3.8e-10 68.9 72 45.8
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 4.9e-10 68.6 72 52.8
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 4.9e-10 68.6 74 48.6
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 6.4e-10 68.2 44 63.6
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.4e-10 68.2 44 63.6
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.4e-10 68.2 44 63.6
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 8.4e-10 67.8 74 50.0
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 8.4e-10 67.8 72 51.4
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 8.4e-10 67.8 67 53.7
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 1.9e-09 66.6 73 52.1
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.9e-09 66.6 90 45.6
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 2.4e-09 66.2 81 49.4
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 2.4e-09 66.2 72 47.2
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 4.1e-09 65.5 67 52.2
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 4.1e-09 65.5 72 47.2
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 4.1e-09 65.5 72 45.8
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 5.4e-09 65.1 76 55.3
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 7.1e-09 64.7 81 53.1
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 7.1e-09 64.7 46 63.0
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 7.1e-09 64.7 66 51.5
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 9.2e-09 64.3 73 47.9
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 9.2e-09 64.3 73 50.7
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 1.2e-08 63.9 78 48.7
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 1.2e-08 63.9 72 50.0
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.2e-08 63.9 67 50.7
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 2.7e-08 62.8 62 51.6
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 2.7e-08 62.8 74 51.4
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 2.7e-08 62.8 37 75.7
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 3.5e-08 62.4 73 50.7
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.5e-08 62.4 37 67.6
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 3.5e-08 62.4 73 49.3
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 6.0e-08 61.6 77 50.6
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 7.8e-08 61.2 48 60.4
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.7e-07 60.1 87 42.5
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.7e-07 60.1 74 50.0
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 1.7e-07 60.1 77 48.1
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.7e-07 60.1 70 47.1
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 1.7e-07 60.1 80 42.5
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 2.3e-07 59.7 80 42.5
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 3.9e-07 58.9 65 49.2
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 3.9e-07 58.9 77 46.8
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 3.9e-07 58.9 73 45.2
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 5.1e-07 58.5 80 45.0
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 5.1e-07 58.5 72 41.7
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 5.1e-07 58.5 78 44.9
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 6.6e-07 58.2 70 51.4
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.6e-07 58.2 72 43.1
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 6.6e-07 58.2 78 39.7
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 8.6e-07 57.8 54 53.7
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 8.6e-07 57.8 54 53.7
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 1.9e-06 56.6 73 43.8
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 2.5e-06 56.2 68 51.5
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.5e-06 56.2 60 48.3
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.5e-06 56.2 54 53.7
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 3.3e-06 55.8 69 46.4
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 3.3e-06 55.8 47 55.3
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.3e-06 55.5 68 45.6
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 4.3e-06 55.5 163 32.5
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 9.6e-06 54.3 72 40.3
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 9.6e-06 54.3 50 54.0


User provided reference genes

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