Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000450 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.6e-48 194.5 93 100.0
CSS0004905 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.4e-39 166.0 79 100.0
CSS0022214 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.1e-18 94.4 49 91.8
CSS0031875 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.1e-18 94.4 49 91.8
CSS0001609 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 6.6e-18 94.0 49 89.8
CSS0014298 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.1e-17 93.2 49 93.9
CSS0017714 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.5e-17 92.8 48 91.7
CANSAT21G2039 Cannabis sativa HOM05D003558 ORTHO05D004392 4.3e-17 91.3 49 89.8
Lj8A204G66 Lonicera japonica HOM05D003558 ORTHO05D004392 4.3e-17 91.3 49 89.8
Sc01g0010420 Simmondsia chinensis HOM05D003558 ORTHO05D004392 4.3e-17 91.3 49 89.8
MSTRG.1797 Avicennia marina HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
CSS0024989 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
Dinv38812 Davidia involucrata HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
Eucgr.E00889 Eucalyptus grandis HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
Hma1.2p1_0440F.1_g153570 Hydrangea macrophylla HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
Lalb_Chr12g0208821 Lupinus albus HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
MD06G1111600 Malus domestica HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
MD14G1132800 Malus domestica HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
Prupe.5G124300 Prunus persica HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
QL02p029625 Quercus lobata HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
QL05p030756 Quercus lobata HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
SalBow8G5190 Salvia bowleyana HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
TAR375G0349 Trochodendron aralioides HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
HPP92_006339 Vanilla planifolia HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
HPP92_027865 Vanilla planifolia HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
GSVIVG01019594001 Vitis vinifera HOM05D003558 ORTHO05D004392 9.6e-17 90.1 49 87.8
MSTRG.13893 Avicennia marina HOM05D003558 ORTHO05D004392 1.2e-16 89.7 49 87.8
CSS0013121 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.2e-16 89.7 49 89.8
Cc08_g16370 Coffea canephora HOM05D003558 ORTHO05D004392 1.2e-16 89.7 49 85.7
Duzib177G1044 Durio zibethinus HOM05D003558 ORTHO05D004392 1.2e-16 89.7 49 87.8
Medtr1g016750 Medicago truncatula HOM05D003558 ORTHO05D004392 1.2e-16 89.7 49 85.7
Psat6g019440 Pisum sativum HOM05D003558 ORTHO05D004392 1.2e-16 89.7 49 85.7
SGA_v2.0_scaffold111G31394 Striga asiatica HOM05D003558 ORTHO05D004392 1.2e-16 89.7 48 89.6
TPR.G13178 Trifolium pratense HOM05D003558 ORTHO05D004392 1.2e-16 89.7 49 85.7
vmacro13883 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 1.2e-16 89.7 49 87.8
vmacro21480 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 1.2e-16 89.7 49 87.8
COL.COLO4_23475 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.6e-16 89.4 58 74.1
DCAR_006513 Daucus carota HOM05D003558 ORTHO05D004392 1.6e-16 89.4 54 77.8
PSO170G3792 Papaver somniferum HOM05D003558 ORTHO05D004392 1.6e-16 89.4 48 89.6
arahy.Tifrunner.gnm1.ann1.HE7D3F Arachis hypogaea HOM05D003558 ORTHO05D004392 2.1e-16 89.0 49 85.7
arahy.Tifrunner.gnm1.ann1.R1RJVJ Arachis hypogaea HOM05D003558 ORTHO05D004392 2.1e-16 89.0 49 85.7
Dinv37501 Davidia involucrata HOM05D003558 ORTHO05D004392 2.1e-16 89.0 49 85.7
Glyma.05G127300 Glycine max HOM05D003558 ORTHO05D004392 2.1e-16 89.0 49 85.7
Glyma.08G082000 Glycine max HOM05D003558 ORTHO05D004392 2.1e-16 89.0 49 85.7
Lj4g0003124 Lotus japonicus HOM05D003558 ORTHO05D004392 2.1e-16 89.0 49 85.7
Phvul.002G197600 Phaseolus vulgaris HOM05D003558 ORTHO05D004392 2.1e-16 89.0 49 85.7
TAR374G0657 Trochodendron aralioides HOM05D003558 ORTHO05D004392 2.1e-16 89.0 49 85.7
VMungo0251G1601 Vigna mungo HOM05D003558 ORTHO05D004392 2.1e-16 89.0 49 85.7
MELO3C016262.2 Cucumis melo HOM05D003558 ORTHO05D004392 2.8e-16 88.6 49 89.8
CsaV3_4G006830 Cucumis sativus L. HOM05D003558 ORTHO05D004392 2.8e-16 88.6 49 89.8
Duzib128G1157 Durio zibethinus HOM05D003558 ORTHO05D004392 2.8e-16 88.6 49 85.7
Eucgr.E00914 Eucalyptus grandis HOM05D003558 ORTHO05D004392 2.8e-16 88.6 57 71.9
Lsat_1_v5_gn_3_12881 Lactuca sativa HOM05D003558 ORTHO05D004392 2.8e-16 88.6 49 83.7
Nn2g12717 Nelumbo nucifera HOM05D003558 ORTHO05D004392 2.8e-16 88.6 49 85.7
Os07g0435100 Oryza sativa ssp. japonica HOM05D003558 ORTHO05D004392 2.8e-16 88.6 50 84.0
Sed0010282 Sechium edule HOM05D003558 ORTHO05D004392 2.8e-16 88.6 49 85.7
Thecc.05G207600 Theobroma cacao HOM05D003558 ORTHO05D004392 2.8e-16 88.6 49 85.7
HanXRQChr15g0472881 Helianthus annuus HOM05D003558 ORTHO05D004392 3.6e-16 88.2 50 82.0
Lj3g0002122 Lotus japonicus HOM05D003558 ORTHO05D004392 3.6e-16 88.2 49 87.8
Psat0s889g0080 Pisum sativum HOM05D003558 ORTHO05D004392 3.6e-16 88.2 49 85.7
Psat7g261400 Pisum sativum HOM05D003558 ORTHO05D004392 3.6e-16 88.2 49 85.7
RcHm_v2.0_Chr7g0186141 Rosa chinensis HOM05D003558 ORTHO05D004392 3.6e-16 88.2 49 85.7
Hund11374 Selenicereus undatus HOM05D003558 ORTHO05D004392 3.6e-16 88.2 49 83.7
CiPaw.11G117400 Carya illinoinensis HOM05D003558 ORTHO05D004392 4.7e-16 87.8 49 85.7
CiPaw.12G080800 Carya illinoinensis HOM05D003558 ORTHO05D004392 4.7e-16 87.8 49 85.7
COL.COLO4_08911 Corchorus olitorius HOM05D003558 ORTHO05D004392 4.7e-16 87.8 54 77.8
COL.COLO4_35445 Corchorus olitorius HOM05D003558 ORTHO05D004392 4.7e-16 87.8 53 77.4
Haze_09103 Corylus avellana HOM05D003558 ORTHO05D004392 4.7e-16 87.8 50 84.0
ECA246G0145 Erigeron canadensis HOM05D003558 ORTHO05D004392 4.7e-16 87.8 49 83.7
HanXRQChr14g0460421 Helianthus annuus HOM05D003558 ORTHO05D004392 4.7e-16 87.8 49 83.7
Oeu041397.1 Olea europaea HOM05D003558 ORTHO05D004392 4.7e-16 87.8 48 87.5
PSO017G6909 Papaver somniferum HOM05D003558 ORTHO05D004392 4.7e-16 87.8 48 87.5
Sed0022053 Sechium edule HOM05D003558 ORTHO05D004392 4.7e-16 87.8 49 85.7
TAR425G0004 Trochodendron aralioides HOM05D003558 ORTHO05D004392 4.7e-16 87.8 49 85.7
Ca_13177_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 6.2e-16 87.4 49 81.6
Ca_18846_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 6.2e-16 87.4 49 81.6
Duzib106G0520 Durio zibethinus HOM05D003558 ORTHO05D004392 6.2e-16 87.4 49 83.7
Actinidia22742 Actinidia chinensis HOM05D003558 ORTHO05D004392 8.1e-16 87.0 48 87.5
Aqoxy2G02732 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 8.1e-16 87.0 49 85.7
ClCG07G011380 Citrullus lanatus HOM05D003558 ORTHO05D004392 8.1e-16 87.0 49 87.8
Lalb_Chr07g0188951 Lupinus albus HOM05D003558 ORTHO05D004392 8.1e-16 87.0 49 83.7
Actinidia22185 Actinidia chinensis HOM05D003558 ORTHO05D005715 1.1e-15 86.7 49 83.7
ATR0602G090 Amborella trichopoda HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 85.7
FvH4_5g11650 Fragaria vesca HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 83.7
FAN04G1402 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 83.7
FAN08G1805 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 83.7
FAN13G2808 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 83.7
FAN18G4084 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 83.7
FAN18G4304 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 83.7
Gohir.1Z049372 Gossypium hirsutum HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 83.7
Gohir.A08G223500 Gossypium hirsutum HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 83.7
Gorai.004G260100 Gossypium raimondii HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 83.7
PGR042G0055 Punica granatum HOM05D003558 ORTHO05D004392 1.1e-15 86.7 49 83.7
EL10Ac5g12950 Beta vulgaris HOM05D003558 ORTHO05D004392 1.4e-15 86.3 49 81.6
Migut.A00609 Erythranthe guttata HOM05D003558 ORTHO05D004392 1.4e-15 86.3 49 83.7
Eucgr.E00681 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.4e-15 86.3 50 84.0
Eucgr.E00943 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.4e-15 86.3 46 87.0
Mapoly0071s0017 Marchantia polymorpha HOM05D003558 ORTHO05D004392 1.4e-15 86.3 48 87.5
Zm00001eb413880 Zea mays HOM05D003558 ORTHO05D004392 1.4e-15 86.3 50 82.0
DCAR_026273 Daucus carota HOM05D003558 ORTHO05D004392 1.8e-15 85.9 49 83.7
AUR62007010 Chenopodium quinoa HOM05D003558 ORTHO05D004392 2.4e-15 85.5 49 81.6
AUR62019874 Chenopodium quinoa HOM05D003558 ORTHO05D004392 2.4e-15 85.5 49 81.6
SEGI_23551 Sequoiadendron giganteum HOM05D003558 ORTHO05D004392 2.4e-15 85.5 48 83.3
TWI81G0268 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 2.4e-15 85.5 49 81.6
Cpa.g.sc79.5 Carica papaya HOM05D003558 ORTHO05D004392 3.1e-15 85.1 49 83.7
Oeu055020.1 Olea europaea HOM05D003558 ORTHO05D004392 3.1e-15 85.1 49 81.6
Oeu009980.1 Olea europaea HOM05D003558 ORTHO05D004392 4.0e-15 84.7 48 85.4
Pp3c17_21360 Physcomitrium patens HOM05D003558 ORTHO05D004392 4.0e-15 84.7 49 81.6
Cfa011973 Carpinus fangiana HOM05D003558 ORTHO05D004392 5.2e-15 84.3 49 81.6
Zm00001eb121180 Zea mays HOM05D003558 ORTHO05D004392 5.2e-15 84.3 48 83.3
AT5G42040 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 8.9e-15 83.6 54 74.1
Nn1g00283 Nelumbo nucifera HOM05D003558 ORTHO05D004392 8.9e-15 83.6 49 81.6
CARHR046430 Cardamine hirsuta HOM05D003558 ORTHO05D004392 1.2e-14 83.2 49 79.6
Sp7g00080 Schrenkiella parvula HOM05D003558 ORTHO05D004392 1.2e-14 83.2 49 79.6
TWI60G0493 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 1.2e-14 83.2 49 79.6
Ah.12g052830 Amaranthus hybridus HOM05D003558 ORTHO05D004392 1.5e-14 82.8 49 79.6
Eucgr.E00961 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.5e-14 82.8 49 83.7
Manes.01G045195 Manihot esculenta HOM05D003558 ORTHO05D004392 1.5e-14 82.8 49 81.6
Manes.02G006900 Manihot esculenta HOM05D003558 ORTHO05D004392 1.5e-14 82.8 49 81.6
AL7G47120 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 2.0e-14 82.4 49 79.6
THA.LOC104817564 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 2.6e-14 82.0 48 81.2
Atru.chr9.1940 Acer truncatum HOM05D003558 ORTHO05D004392 3.4e-14 81.6 49 81.6
Ciclev10021697m.g Citrus clementina HOM05D003558 ORTHO05D004392 3.4e-14 81.6 49 81.6
Pp3c14_17630 Physcomitrium patens HOM05D003558 ORTHO05D004392 4.4e-14 81.3 49 79.6
BcaB07g31471 Brassica carinata HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
BcaB07g31496 Brassica carinata HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
BcaC04g22576 Brassica carinata HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
BcaC04g22613 Brassica carinata HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
A09p14400 Brassica napus HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
A09p14640 Brassica napus HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
C09p17320 Brassica napus HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
C09p17720 Brassica napus HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
BolC9t54634H Brassica oleracea HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
BolC9t54666H Brassica oleracea HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
BraA09t37110Z Brassica rapa HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
Carub.0002s0023 Capsella rubella HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
Potri.003G142700 Populus trichocarpa HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 79.6
Sp2g00230 Schrenkiella parvula HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 77.6
Solyc08g082700.3 Solanum lycopersicum HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 81.6
Sopen08g030930 Solanum pennellii HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 81.6
PGSC0003DMG400012259 Solanum tuberosum HOM05D003558 ORTHO05D004392 5.8e-14 80.9 49 81.6
THA.LOC104809321 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 5.8e-14 80.9 48 79.2
Aa31LG2G1510 Aethionema arabicum HOM05D003558 ORTHO05D004392 1.3e-13 79.7 49 75.5
BraA09t37087Z Brassica rapa HOM05D003558 ORTHO05D004392 1.3e-13 79.7 49 75.5
Thhalv10023640m.g Eutrema salsugineum HOM05D003558 ORTHO05D004392 1.3e-13 79.7 49 75.5
Nitab4.5_0000357g0410 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.7e-13 79.3 49 77.6
Nitab4.5_0002793g0010 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.7e-13 79.3 48 81.2
Peaxi162Scf00074g00546 Petunia axillaris HOM05D003558 ORTHO05D004392 1.7e-13 79.3 48 81.2
Potri.001G088200 Populus trichocarpa HOM05D003558 ORTHO05D004392 1.7e-13 79.3 49 77.6
AL2G10280 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 2.2e-13 79.0 49 75.5
AT1G64520 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 2.2e-13 79.0 49 75.5
CAN.G567.30 Capsicum annuum HOM05D003558 ORTHO05D004392 3.8e-13 78.2 49 79.6
Nitab4.5_0003266g0030 Nicotiana tabacum HOM05D003558 ORTHO05D004392 4.9e-13 77.8 48 77.1
Peaxi162Scf00117g00921 Petunia axillaris HOM05D003558 ORTHO05D004392 4.9e-13 77.8 49 77.6
Nitab4.5_0002367g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 8.4e-13 77.0 49 77.6
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 8.4e-13 77.0 49 75.5
Sabra03G0103300 Salix brachista HOM05D003558 ORTHO05D004392 2.4e-12 75.5 49 73.5
AagrBONN_evm.TU.Sc2ySwM_228.783 Anthoceros agrestis HOM05D003558 ORTHO05D004392 5.4e-12 74.3 48 79.2
Nitab4.5_0007285g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.2e-11 73.2 48 77.1
CBR_g36847 Chara braunii HOM05D003558 ORTHO05D004392 1.0e-10 70.1 48 70.8
Sc07g0010140 Simmondsia chinensis HOM05D003558 ORTHO05D004392 2.5e-09 65.5 37 83.8
SMO196G0279 Selaginella moellendorffii HOM05D003558 ORTHO05D004392 9.6e-09 63.5 48 64.6
Aqoxy2G02711 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 9.0e-07 57.0 31 87.1
CSS0010814 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.0e-06 55.8 44 65.9
RcHm_v2.0_Chr2g0138681 Rosa chinensis HOM05D003558 ORTHO05D004392 7.6e-06 53.9 56 58.9
Glyma.03G059800 Glycine max HOM05D000140 ORTHO05D004392 9.9e-06 53.5 31 77.4


User provided reference genes

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