Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-62 243.0 122 100.0
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.4e-60 234.2 125 95.2
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.9e-37 158.7 121 66.1
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.4e-36 156.4 126 65.9
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.4e-36 155.6 125 66.4
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.4e-36 154.5 125 66.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 5.4e-36 154.5 117 68.4
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 2.1e-35 152.5 114 68.4
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 6.0e-35 151.0 116 68.1
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.3e-34 149.8 125 64.0
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-34 149.4 118 65.3
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.3e-34 149.1 118 65.3
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.3e-34 149.1 120 63.3
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 3.0e-34 148.7 116 65.5
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 3.9e-34 148.3 119 63.9
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 3.9e-34 148.3 118 65.3
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 6.6e-34 147.5 116 64.7
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 6.6e-34 147.5 117 65.8
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 8.6e-34 147.1 118 62.7
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 8.6e-34 147.1 118 64.4
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.1e-33 146.7 119 63.0
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.1e-33 146.7 118 64.4
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.5e-33 146.4 127 61.4
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.9e-33 146.0 116 66.4
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.3e-33 145.2 116 64.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 3.3e-33 145.2 120 63.3
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 5.6e-33 144.4 116 65.5
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 7.3e-33 144.1 136 59.6
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 9.6e-33 143.7 116 62.9
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 9.6e-33 143.7 116 64.7
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 9.6e-33 143.7 116 64.7
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.2e-32 143.3 119 61.3
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.2e-32 143.3 116 63.8
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.2e-32 143.3 117 63.2
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.6e-32 142.9 121 64.5
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.1e-32 142.5 116 62.1
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 2.1e-32 142.5 117 63.2
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 2.1e-32 142.5 119 63.0
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 2.8e-32 142.1 131 60.3
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 3.6e-32 141.7 122 59.8
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 3.6e-32 141.7 116 61.2
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 3.6e-32 141.7 124 61.3
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 4.7e-32 141.4 124 62.9
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 6.2e-32 141.0 117 63.2
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 6.2e-32 141.0 117 63.2
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 6.2e-32 141.0 126 57.9
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 6.2e-32 141.0 117 60.7
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 8.1e-32 140.6 116 62.9
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.4e-31 139.8 131 59.5
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.4e-31 139.8 115 60.9
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.4e-31 139.8 119 57.1
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.8e-31 139.4 117 62.4
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.8e-31 139.4 117 63.2
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.8e-31 139.4 126 57.1
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 4.0e-31 138.3 126 55.6
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 4.0e-31 138.3 117 61.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 6.8e-31 137.5 116 62.1
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 6.8e-31 137.5 113 61.1
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 6.8e-31 137.5 119 57.1
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 6.8e-31 137.5 124 60.5
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.5e-30 136.3 116 63.8
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.5e-30 136.3 114 61.4
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 3.4e-30 135.2 112 63.4
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 7.6e-30 134.0 116 62.1
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.3e-29 133.3 122 54.9
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.7e-29 132.9 107 64.5
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 2.9e-29 132.1 154 50.0
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.1e-28 130.2 116 59.5
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.4e-28 129.8 116 56.9
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.9e-28 129.4 134 53.0
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.4e-28 129.0 117 53.0
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.2e-28 128.6 116 58.6
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.2e-28 128.6 115 59.1
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.2e-28 128.3 124 53.2
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 4.2e-28 128.3 120 54.2
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.4e-28 127.9 116 58.6
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 5.4e-28 127.9 120 53.3
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 7.1e-28 127.5 122 59.8
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.2e-27 126.7 114 60.5
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.1e-27 125.9 116 58.6
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 2.7e-27 125.6 117 52.1
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 2.7e-27 125.6 118 57.6
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 3.5e-27 125.2 115 52.2
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 2.3e-26 122.5 115 58.3
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 9.6e-25 117.1 121 48.8
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 1.3e-24 116.7 121 49.6
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.3e-24 116.7 133 51.9
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.6e-24 116.3 121 51.2
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 3.6e-24 115.2 124 47.6
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 8.1e-24 114.0 116 53.4
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.4e-23 113.2 121 46.3
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.8e-23 112.8 114 55.3
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.8e-23 112.8 121 46.3
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.4e-23 112.5 123 47.2
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 4.0e-23 111.7 125 46.4
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.0e-23 111.7 82 72.0
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 5.3e-23 111.3 116 51.7
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 6.9e-23 110.9 121 47.1
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.5e-22 109.8 78 74.4
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.0e-22 109.4 117 47.0
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.4e-22 108.2 121 47.1
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.2e-21 105.9 128 45.3
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 4.9e-21 104.8 78 70.5
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.4e-20 103.2 72 69.4
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.4e-20 103.2 81 65.4
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.9e-20 102.8 122 45.1
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.9e-20 102.8 122 45.1
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 5.4e-20 101.3 129 45.0
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 5.4e-20 101.3 129 45.7
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.2e-19 100.1 72 66.7
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.2e-19 100.1 78 64.1
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.6e-19 99.8 129 44.2
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.6e-19 99.8 129 45.0
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 2.1e-19 99.4 122 43.4
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.3e-18 95.9 104 52.9
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 8.7e-18 94.0 127 44.1
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 9.6e-17 90.5 68 64.7
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-16 90.1 129 44.2
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.8e-16 88.2 77 55.8
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.8e-15 86.3 113 38.9
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 4.0e-15 85.1 128 39.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-14 83.6 56 75.0
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.7e-13 79.7 56 73.2
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.8e-13 78.6 121 38.8
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 4.9e-13 78.2 121 35.5
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 6.4e-13 77.8 119 39.5
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.4e-12 76.6 121 42.1
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 4.2e-12 75.1 121 42.1
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 4.2e-12 75.1 121 42.1
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 7.1e-12 74.3 139 36.7
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 2.1e-11 72.8 83 44.6
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.6e-11 71.6 122 36.9
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 7.9e-11 70.9 68 51.5
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 5.6e-09 64.7 118 31.4
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.6e-08 63.2 121 30.6
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 2.8e-08 62.4 66 53.0
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.7e-08 62.0 71 47.9
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 6.2e-08 61.2 88 35.2
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.4e-07 59.3 102 30.4
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 5.8e-06 54.7 116 32.8


User provided reference genes

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