Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 4.5e-97 358.2 222 100.0
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 2.2e-80 302.8 176 86.9
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 1.0e-77 293.9 243 75.3
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 2.2e-72 276.2 176 80.7
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 2.9e-72 275.8 176 79.5
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 3.2e-71 272.3 178 77.5
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 4.2e-71 271.9 161 83.2
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.2e-70 270.4 175 78.3
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 2.7e-70 269.2 177 78.0
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 4.7e-70 268.5 177 76.8
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 6.1e-70 268.1 180 76.7
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 1.0e-69 267.3 175 77.1
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 3.0e-69 265.8 178 74.7
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 3.0e-69 265.8 180 76.1
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 5.2e-69 265.0 176 77.3
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 6.8e-69 264.6 179 76.0
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 1.2e-68 263.8 175 74.9
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 1.2e-68 263.8 175 74.9
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 1.5e-68 263.5 173 76.3
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 1.5e-68 263.5 175 76.0
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 2.6e-68 262.7 177 74.0
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 2.6e-68 262.7 179 75.4
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 4.4e-68 261.9 177 74.6
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 5.7e-68 261.5 176 76.7
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 7.5e-68 261.2 176 75.6
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 7.5e-68 261.2 171 77.2
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 9.8e-68 260.8 177 75.1
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.3e-67 260.4 179 73.7
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 1.3e-67 260.4 180 75.0
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.3e-67 260.4 180 75.0
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 1.3e-67 260.4 180 75.0
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.7e-67 260.0 175 72.6
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 2.8e-67 259.2 177 74.6
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 2.8e-67 259.2 154 83.1
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 2.8e-67 259.2 176 76.1
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 3.7e-67 258.8 177 75.7
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 3.7e-67 258.8 172 75.6
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 8.3e-67 257.7 172 77.3
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 8.3e-67 257.7 175 71.4
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 8.3e-67 257.7 175 71.4
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 8.3e-67 257.7 162 77.8
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 1.4e-66 256.9 175 73.7
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 1.8e-66 256.5 171 74.3
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 4.1e-66 255.4 147 85.7
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 5.4e-66 255.0 177 72.9
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 7.0e-66 254.6 226 71.7
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 1.2e-65 253.8 148 81.1
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 1.2e-65 253.8 176 73.3
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 1.2e-65 253.8 171 76.6
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 2.0e-65 253.1 178 73.6
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 2.7e-65 252.7 171 76.6
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 2.7e-65 252.7 171 74.9
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 4.5e-65 251.9 175 74.9
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 4.5e-65 251.9 147 85.0
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 5.9e-65 251.5 178 72.5
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 5.9e-65 251.5 175 72.0
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 3.8e-64 248.8 148 82.4
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 6.5e-64 248.1 148 85.1
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.1e-63 247.3 178 69.1
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 3.2e-63 245.7 175 74.3
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 5.5e-63 245.0 155 77.4
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 5.5e-63 245.0 183 70.5
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 9.5e-63 244.2 134 88.8
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 2.7e-62 242.7 176 68.2
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 3.6e-62 242.3 155 76.8
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 4.7e-62 241.9 225 75.1
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 8.0e-62 241.1 166 73.5
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.8e-61 240.0 227 69.2
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 1.5e-60 236.9 174 66.7
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 1.5e-60 236.9 145 77.2
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 2.0e-60 236.5 174 66.7
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 2.6e-60 236.1 174 66.7
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 4.4e-60 235.3 154 76.6
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 4.4e-60 235.3 173 69.4
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 7.5e-60 234.6 175 66.9
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 9.8e-60 234.2 152 75.7
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 2.2e-59 233.0 178 64.6
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 2.2e-59 233.0 178 64.6
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 2.8e-59 232.6 178 64.0
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 2.8e-59 232.6 178 64.0
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 8.3e-59 231.1 130 85.4
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 1.4e-58 230.3 178 68.5
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 3.1e-58 229.2 136 84.6
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 3.1e-58 229.2 137 82.5
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 1.2e-57 227.3 177 65.0
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 2.3e-56 223.0 135 78.5
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 6.6e-56 221.5 239 52.7
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.4e-53 213.8 155 67.7
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 3.4e-52 209.1 157 65.6
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 2.7e-49 199.5 153 68.6
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 1.5e-44 183.7 183 57.4
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 5.8e-44 181.8 176 56.8
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 2.9e-43 179.5 171 53.8
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 6.4e-43 178.3 178 53.9
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 1.2e-41 174.1 126 74.6
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 3.5e-41 172.6 91 87.9
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 1.0e-40 171.0 137 70.8
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 2.5e-39 166.4 131 67.9
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 6.2e-38 161.8 175 53.1
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 2.7e-33 146.4 184 46.7
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 3.3e-31 139.4 116 69.0
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 3.3e-31 139.4 116 69.0
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 3.1e-29 132.9 131 55.7
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 3.5e-25 119.4 147 46.3
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 6.2e-22 108.6 85 72.9
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 1.4e-21 107.5 96 61.5
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 2.0e-20 103.6 96 61.5
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.6e-20 103.2 80 73.8
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 2.7e-17 93.2 99 46.5
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 3.6e-14 82.8 63 68.3
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 3.2e-10 69.7 31 90.3
Actinidia31107 Actinidia chinensis HOM05D006601 ORTHO05D008281 4.2e-10 69.3 45 75.6
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 7.9e-09 65.1 37 86.5
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.0e-08 64.7 31 83.9
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 1.5e-07 60.8 97 46.4
EL10Ac8g19171 Beta vulgaris HOM05D006601 ORTHO05D008281 7.4e-07 58.5 25 92.0
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 6.2e-06 55.5 87 40.2


User provided reference genes

Program Settings