Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 2.8e-171 605.1 290 100.0
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 9.5e-156 553.5 286 90.6
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.2e-155 553.1 281 92.2
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 4.0e-154 548.1 289 88.2
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 2.0e-153 545.8 289 87.5
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 6.4e-152 540.8 289 86.9
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 1.6e-150 536.2 279 89.6
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 6.0e-150 534.3 277 89.5
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 3.9e-149 531.6 323 79.9
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 3.3e-148 528.5 280 86.8
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 3.1e-146 521.9 286 85.7
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 3.1e-146 521.9 277 88.4
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 4.0e-146 521.5 278 86.3
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 4.0e-146 521.5 279 86.4
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 4.0e-146 521.5 286 85.0
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 5.2e-146 521.2 278 86.7
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 8.9e-146 520.4 278 89.2
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 1.5e-145 519.6 286 85.0
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 3.4e-145 518.5 291 83.8
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.7e-144 516.2 255 94.5
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 2.2e-144 515.8 278 86.0
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 6.4e-144 514.2 277 86.6
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 8.4e-144 513.8 283 86.2
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 1.9e-143 512.7 284 84.2
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 2.4e-143 512.3 294 83.7
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 3.2e-143 511.9 278 87.8
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 3.2e-143 511.9 283 83.7
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 7.1e-143 510.8 278 86.3
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 1.2e-142 510.0 281 82.6
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 1.6e-142 509.6 290 83.8
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 2.1e-142 509.2 294 83.3
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.5e-142 508.4 275 85.8
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 3.5e-142 508.4 286 82.2
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 7.8e-142 507.3 290 84.1
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 7.8e-142 507.3 287 84.7
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 1.7e-141 506.1 280 84.3
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 3.0e-141 505.4 278 86.7
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 3.0e-141 505.4 278 86.7
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 3.9e-141 505.0 278 87.1
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 5.1e-141 504.6 290 82.4
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 6.6e-141 504.2 285 86.3
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 1.1e-140 503.4 283 83.4
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.1e-140 503.4 277 85.6
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 2.5e-140 502.3 276 85.5
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 2.5e-140 502.3 286 84.6
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 3.3e-140 501.9 280 85.7
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 9.6e-140 500.4 280 82.5
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 1.6e-139 499.6 284 83.5
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.6e-139 499.6 304 79.9
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 2.8e-139 498.8 286 84.3
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 8.1e-139 497.3 280 80.0
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 4.0e-138 495.0 284 83.1
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 4.0e-138 495.0 265 87.9
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 8.9e-138 493.8 276 84.1
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 8.9e-138 493.8 278 83.5
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 2.6e-137 492.3 278 83.1
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 4.4e-137 491.5 274 83.2
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 4.4e-137 491.5 274 82.8
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 5.8e-137 491.1 276 80.8
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 7.6e-137 490.7 298 80.2
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 2.9e-136 488.8 274 82.8
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 2.9e-136 488.8 280 80.0
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 4.9e-136 488.0 274 82.1
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 6.4e-136 487.6 280 79.6
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 8.4e-136 487.3 280 78.9
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 4.2e-135 485.0 278 79.9
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 5.4e-135 484.6 277 79.4
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 1.2e-134 483.4 280 78.6
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.2e-134 483.4 273 82.4
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 1.6e-134 483.0 280 77.9
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 2.7e-134 482.3 288 77.8
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 3.5e-134 481.9 283 79.9
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 1.3e-133 479.9 273 83.2
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 2.3e-133 479.2 273 81.7
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 3.0e-133 478.8 274 82.1
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 3.0e-133 478.8 273 81.7
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 5.1e-133 478.0 288 80.6
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 6.6e-133 477.6 277 81.2
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 1.1e-132 476.9 276 80.4
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 3.3e-132 475.3 276 81.9
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 3.3e-132 475.3 285 80.0
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 4.3e-132 474.9 276 81.9
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 1.3e-131 473.4 317 73.5
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 2.1e-131 472.6 282 80.1
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 3.6e-131 471.9 281 80.1
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 8.1e-131 470.7 287 78.4
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 1.1e-130 470.3 277 81.9
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 9.0e-130 467.2 377 64.5
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.2e-129 466.8 323 70.3
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 1.7e-128 463.0 281 76.5
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 1.4e-127 459.9 293 76.1
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 3.2e-127 458.8 275 78.2
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 3.2e-127 458.8 275 78.2
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 9.3e-127 457.2 277 77.3
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 1.7e-125 453.0 282 77.3
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 5.1e-125 451.4 273 76.6
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 1.5e-124 449.9 271 76.8
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 1.5e-124 449.9 273 76.2
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 3.6e-123 445.3 273 78.0
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.4e-122 443.4 314 70.1
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 9.0e-122 440.7 280 74.3
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 2.6e-121 439.1 270 74.8
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 5.8e-121 438.0 270 74.1
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 7.9e-118 427.6 238 84.5
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 4.3e-116 421.8 277 72.2
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 8.1e-115 417.5 271 71.6
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 3.9e-109 398.7 226 84.5
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.1e-108 397.1 241 78.0
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.9e-108 396.4 222 84.2
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 1.5e-105 386.7 292 67.5
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 7.6e-105 384.4 197 90.4
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 1.3e-104 383.6 275 69.1
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 8.5e-104 380.9 198 89.9
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 5.7e-100 368.2 276 60.5
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 7.4e-100 367.9 210 81.4
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 3.2e-95 352.4 276 60.1
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 5.1e-93 345.1 272 61.0
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 4.8e-91 338.6 218 75.7
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 4.2e-87 325.5 189 80.4
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 4.2e-87 325.5 189 80.4
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.7e-80 303.5 229 67.2
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.6e-78 297.0 226 62.4
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 2.0e-76 290.0 307 52.8
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 3.7e-75 285.8 271 52.8
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 1.4e-69 267.3 155 79.4
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.6e-65 253.8 164 76.2
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 2.7e-65 253.1 195 61.5
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 5.2e-61 238.8 210 53.3
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 5.0e-56 222.2 131 78.6
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 1.5e-55 220.7 266 45.9
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 4.6e-49 199.1 237 47.3
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 4.6e-41 172.6 107 72.9
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 2.8e-38 163.3 274 39.1
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 3.1e-37 159.8 211 40.3
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 4.1e-34 149.4 111 64.9
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 1.4e-29 134.4 95 66.3
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 3.2e-18 96.7 77 59.7
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 2.8e-14 83.6 39 92.3
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 4.8e-14 82.8 45 82.2


User provided reference genes

Program Settings