Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000372 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 1.5e-64 249.2 115 100.0
Cc06_g16420 Coffea canephora HOM05D000194 ORTHO05D000069 1.6e-18 96.3 65 64.6
Atru.chr1.946 Acer truncatum HOM05D000194 ORTHO05D000069 4.1e-17 91.7 64 65.6
Actinidia09371 Actinidia chinensis HOM05D000194 ORTHO05D000069 1.2e-16 90.1 70 62.9
Rhsim03G0010700 Rhododendron simsii HOM05D000194 ORTHO05D000069 7.7e-16 87.4 69 56.5
Hma1.2p1_0856F.1_g229080 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 1.7e-15 86.3 86 53.5
Cpa.g.sc85.120 Carica papaya HOM05D000194 ORTHO05D000069 2.9e-15 85.5 67 64.2
Duzib093G0141 Durio zibethinus HOM05D000194 ORTHO05D000069 2.9e-15 85.5 66 62.1
Thecc.05G165300 Theobroma cacao HOM05D000194 ORTHO05D000069 3.8e-15 85.1 61 63.9
Potri.006G057200 Populus trichocarpa HOM05D000194 ORTHO05D000069 8.5e-15 84.0 65 58.5
Actinidia20294 Actinidia chinensis HOM05D000194 ORTHO05D000069 2.5e-14 82.4 58 67.2
Manes.09G030600 Manihot esculenta HOM05D000194 ORTHO05D000069 2.5e-14 82.4 61 63.9
vmacro08023 Vaccinium macrocarpon HOM05D000194 ORTHO05D000069 5.5e-14 81.3 93 46.2
Potri.016G051100 Populus trichocarpa HOM05D000194 ORTHO05D000069 1.2e-13 80.1 65 58.5
Phvul.001G138200 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 2.7e-13 79.0 58 63.8
FvH4_6g22930 Fragaria vesca HOM05D000194 ORTHO05D000069 3.6e-13 78.6 58 62.1
FAN14G1392 Fragaria x ananassa HOM05D000194 ORTHO05D000069 3.6e-13 78.6 58 62.1
FAN05G5106 Fragaria x ananassa HOM05D000194 ORTHO05D000069 6.1e-13 77.8 58 62.1
Glyma.02G174800 Glycine max HOM05D000194 ORTHO05D000069 7.9e-13 77.4 59 62.7
RcHm_v2.0_Chr3g0480751 Rosa chinensis HOM05D000194 ORTHO05D000069 7.9e-13 77.4 58 62.1
Sabra06G0040300 Salix brachista HOM05D000194 ORTHO05D000069 7.9e-13 77.4 62 58.1
Sopen10g029710 Solanum pennellii HOM05D000194 ORTHO05D000069 7.9e-13 77.4 65 53.8
Lj1g0022078 Lotus japonicus HOM05D000194 ORTHO05D000069 1.0e-12 77.0 58 60.3
Peaxi162Scf00003g04241 Petunia axillaris HOM05D000194 ORTHO05D000069 1.0e-12 77.0 65 53.8
PGSC0003DMG400008183 Solanum tuberosum HOM05D000194 ORTHO05D000069 1.0e-12 77.0 65 52.3
GSVIVG01033350001 Vitis vinifera HOM05D000194 ORTHO05D000069 1.4e-12 76.6 66 57.6
FAN09G1002 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.8e-12 76.3 58 60.3
Manes.08G047400 Manihot esculenta HOM05D000194 ORTHO05D000069 2.3e-12 75.9 65 56.9
Nitab4.5_0003477g0040 Nicotiana tabacum HOM05D000194 ORTHO05D000069 2.3e-12 75.9 65 53.8
Glyma.03G141200 Glycine max HOM05D000194 ORTHO05D000069 3.0e-12 75.5 58 60.3
Gohir.D09G122100 Gossypium hirsutum HOM05D000194 ORTHO05D000069 3.0e-12 75.5 60 60.0
Nitab4.5_0008022g0030 Nicotiana tabacum HOM05D000194 ORTHO05D000069 3.0e-12 75.5 65 53.8
FAN02G1333 Fragaria x ananassa HOM05D000194 ORTHO05D000069 3.9e-12 75.1 58 60.3
Glyma.19G143900 Glycine max HOM05D000194 ORTHO05D000069 3.9e-12 75.1 58 60.3
VMungo1383G2350 Vigna mungo HOM05D000194 ORTHO05D000069 3.9e-12 75.1 58 62.1
arahy.Tifrunner.gnm1.ann1.VUQ1KR Arachis hypogaea HOM05D000194 ORTHO05D000069 5.1e-12 74.7 58 58.6
CAN.G1161.5 Capsicum annuum HOM05D000194 ORTHO05D000069 5.1e-12 74.7 65 52.3
Eucgr.A02413 Eucalyptus grandis HOM05D000194 ORTHO05D000069 5.1e-12 74.7 58 62.1
Nitab4.5_0000608g0010 Nicotiana tabacum HOM05D000194 ORTHO05D000069 5.1e-12 74.7 75 46.7
Sabra16G0054900 Salix brachista HOM05D000194 ORTHO05D000069 5.1e-12 74.7 61 55.7
arahy.Tifrunner.gnm1.ann1.35WB4A Arachis hypogaea HOM05D000194 ORTHO05D000069 6.7e-12 74.3 58 58.6
Cfa016880 Carpinus fangiana HOM05D000194 ORTHO05D000069 6.7e-12 74.3 65 55.4
Haze_19925 Corylus avellana HOM05D000194 ORTHO05D000069 6.7e-12 74.3 65 55.4
Oeu033762.1 Olea europaea HOM05D000194 ORTHO05D000069 8.8e-12 73.9 64 53.1
Gohir.A11G313800 Gossypium hirsutum HOM05D000194 ORTHO05D000069 1.1e-11 73.6 61 59.0
Medtr1g059270 Medicago truncatula HOM05D000194 ORTHO05D000069 1.1e-11 73.6 58 60.3
CiPaw.10G029500 Carya illinoinensis HOM05D000194 ORTHO05D000069 1.5e-11 73.2 84 50.0
Ca_12120_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 1.5e-11 73.2 58 60.3
TWI77G0641 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 1.5e-11 73.2 61 55.7
MSTRG.6461 Avicennia marina HOM05D000194 ORTHO05D000069 4.3e-11 71.6 66 51.5
Glyma.10G093600 Glycine max HOM05D000194 ORTHO05D000069 5.7e-11 71.2 58 56.9
Ciclev10005087m.g Citrus clementina HOM05D000194 ORTHO05D000069 7.4e-11 70.9 62 59.7
Gohir.A01G195300 Gossypium hirsutum HOM05D000194 ORTHO05D000069 7.4e-11 70.9 65 55.4
MD14G1064200 Malus domestica HOM05D000194 ORTHO05D000069 7.4e-11 70.9 65 52.3
Solyc10g079070.2 Solanum lycopersicum HOM05D000194 ORTHO05D000069 7.4e-11 70.9 65 50.8
Gorai.006G139800 Gossypium raimondii HOM05D000194 ORTHO05D000069 9.7e-11 70.5 50 64.0
arahy.Tifrunner.gnm1.ann1.IJCM88 Arachis hypogaea HOM05D000194 ORTHO05D000069 1.3e-10 70.1 58 56.9
VMungo0720G2682 Vigna mungo HOM05D000194 ORTHO05D000069 1.3e-10 70.1 61 57.4
Lj5g0023940 Lotus japonicus HOM05D000194 ORTHO05D000069 1.7e-10 69.7 57 57.9
Prupe.7G070200 Prunus persica HOM05D000194 ORTHO05D000069 2.2e-10 69.3 64 48.4
Medtr7g092510 Medicago truncatula HOM05D000194 ORTHO05D000069 2.8e-10 68.9 59 59.3
QL07p022241 Quercus lobata HOM05D000194 ORTHO05D000069 2.8e-10 68.9 65 52.3
DCAR_013568 Daucus carota HOM05D000194 ORTHO05D000069 3.7e-10 68.6 67 55.2
CiPaw.09G033800 Carya illinoinensis HOM05D000194 ORTHO05D000069 6.3e-10 67.8 65 52.3
Ca_30035_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 6.3e-10 67.8 58 58.6
Phvul.007G256800 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 8.2e-10 67.4 61 55.7
TPR.G4765 Trifolium pratense HOM05D000194 ORTHO05D000069 1.4e-09 66.6 65 52.3
TAR623G1219 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.4e-09 66.6 89 41.6
Gorai.002G229100 Gossypium raimondii HOM05D000194 ORTHO05D000069 1.8e-09 66.2 62 54.8
Lalb_Chr25g0287541 Lupinus albus HOM05D000194 ORTHO05D000069 3.1e-09 65.5 51 58.8
Peaxi162Scf00285g00230 Petunia axillaris HOM05D000194 ORTHO05D000069 3.1e-09 65.5 66 50.0
Hund19175 Selenicereus undatus HOM05D000194 ORTHO05D000069 4.1e-09 65.1 68 48.5
CANSAT80G1730 Cannabis sativa HOM05D000194 ORTHO05D000069 6.9e-09 64.3 63 50.8
Migut.K00063 Erythranthe guttata HOM05D000194 ORTHO05D000069 6.9e-09 64.3 67 47.8
Lalb_Chr20g0110991 Lupinus albus HOM05D000194 ORTHO05D000069 6.9e-09 64.3 58 53.4
Gohir.D01G185700 Gossypium hirsutum HOM05D000194 ORTHO05D000069 1.2e-08 63.5 62 53.2
Sc13g0002040 Simmondsia chinensis HOM05D000194 ORTHO05D000069 2.0e-08 62.8 61 47.5
ClCG10G017310 Citrullus lanatus HOM05D000194 ORTHO05D000069 2.6e-08 62.4 60 51.7
CsaV3_3G039100 Cucumis sativus L. HOM05D000194 ORTHO05D000069 2.6e-08 62.4 60 53.3
Lalb_Chr01g0017591 Lupinus albus HOM05D000194 ORTHO05D000069 4.5e-08 61.6 58 50.0
MD12G1064000 Malus domestica HOM05D000194 ORTHO05D000069 4.5e-08 61.6 58 53.4
AUR62024373 Chenopodium quinoa HOM05D000194 ORTHO05D000069 5.9e-08 61.2 59 52.5
AUR62025981 Chenopodium quinoa HOM05D000194 ORTHO05D000069 5.9e-08 61.2 59 52.5
EL10Ac3g06983 Beta vulgaris HOM05D000194 ORTHO05D000069 3.8e-07 58.5 58 48.3
Sed0022117 Sechium edule HOM05D000194 ORTHO05D000069 6.5e-07 57.8 61 49.2
Ah.04g152030 Amaranthus hybridus HOM05D006723 ORTHO05D008194 8.5e-07 57.4 62 45.2
SalBow6G2031 Salvia bowleyana HOM05D000194 ORTHO05D000069 1.1e-06 57.0 75 44.0
Lju124C34G3 Lonicera japonica HOM05D000194 ORTHO05D000069 1.9e-06 56.2 48 56.2
SalBow1G1429 Salvia bowleyana HOM05D000194 ORTHO05D000069 1.9e-06 56.2 59 50.8
SalBow1G1573 Salvia bowleyana HOM05D000194 ORTHO05D000069 1.9e-06 56.2 59 50.8
Lsat_1_v5_gn_9_28401 Lactuca sativa HOM05D000194 ORTHO05D000069 7.2e-06 54.3 64 42.2
Ah.13g076150 Amaranthus hybridus HOM05D000194 ORTHO05D000069 9.4e-06 53.9 60 46.7


User provided reference genes

Program Settings