Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.9e-140 501.5 263 100.0
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 6.9e-137 490.7 263 97.7
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 5.7e-67 258.5 280 54.3
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 6.6e-63 245.0 287 53.3
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 3.2e-57 226.1 282 52.1
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 5.4e-57 225.3 288 50.3
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 9.8e-51 204.5 270 52.2
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.4e-44 184.1 296 41.6
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 7.5e-43 178.3 271 43.5
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.3e-42 177.6 267 45.3
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.9e-41 173.7 296 41.2
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 3.3e-38 162.9 280 40.4
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 9.5e-38 161.4 292 39.4
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 1.2e-37 161.0 258 45.3
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.7e-37 159.1 265 44.9
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 4.0e-36 156.0 266 41.7
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 8.9e-36 154.8 262 46.2
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 2.0e-35 153.7 282 40.8
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 5.8e-35 152.1 238 42.9
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.8e-34 149.4 240 42.1
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.4e-33 146.7 272 40.8
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 3.2e-33 146.4 240 41.7
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 4.1e-33 146.0 272 41.2
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 2.7e-32 143.3 302 38.4
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 4.6e-32 142.5 260 41.2
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 7.8e-32 141.7 277 39.4
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 2.3e-31 140.2 317 35.0
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 3.9e-31 139.4 297 36.7
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 6.6e-31 138.7 273 36.3
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.5e-30 137.5 316 37.0
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 1.5e-30 137.5 256 39.8
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 5.6e-30 135.6 255 39.6
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.1e-29 133.7 270 38.9
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.1e-29 133.7 259 39.8
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 4.7e-29 132.5 256 37.1
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.1e-28 131.3 251 36.7
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.4e-28 131.0 242 39.7
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.8e-28 130.6 269 36.8
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.8e-28 130.6 254 38.2
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 2.4e-28 130.2 234 43.2
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 5.2e-28 129.0 269 36.8
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 5.2e-28 129.0 167 50.3
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 9.0e-28 128.3 251 35.9
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.5e-27 127.5 270 37.8
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.0e-27 127.1 250 36.0
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 2.0e-27 127.1 278 34.5
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.4e-27 125.9 219 42.9
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 9.9e-27 124.8 246 35.0
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.3e-26 124.4 228 42.1
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 1.7e-26 124.0 277 37.5
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 6.4e-26 122.1 281 36.3
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 6.4e-26 122.1 279 33.7
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 6.4e-26 122.1 278 37.1
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 5.4e-25 119.0 308 33.8
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 5.4e-25 119.0 267 40.8
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 9.3e-25 118.2 209 38.8
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.2e-24 117.9 250 39.2
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 2.7e-24 116.7 287 35.2
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 6.0e-24 115.5 247 38.9
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 7.8e-24 115.2 252 38.1
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.0e-23 114.8 250 38.8
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 3.3e-22 109.8 300 33.0
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 3.6e-21 106.3 257 32.7
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 3.1e-20 103.2 273 33.7
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 4.0e-20 102.8 265 33.6
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 5.3e-20 102.4 279 31.5
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 9.0e-20 101.7 185 40.5
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 3.4e-19 99.8 160 44.4
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 4.5e-19 99.4 302 30.1
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 7.6e-19 98.6 217 36.9
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 2.2e-18 97.1 266 33.1
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 2.2e-18 97.1 324 30.2
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 2.9e-18 96.7 258 31.4
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 1.1e-17 94.7 174 37.9
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.6e-16 90.9 265 30.9
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 2.1e-16 90.5 144 41.0
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 2.7e-16 90.1 259 31.7
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 4.6e-16 89.4 253 30.8
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 6.0e-16 89.0 255 34.1
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 6.0e-16 89.0 251 34.3
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 7.9e-16 88.6 260 33.5
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.3e-15 87.8 255 32.2
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 2.3e-15 87.0 170 38.8
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.3e-15 87.0 104 50.0
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 3.9e-15 86.3 267 34.1
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 8.7e-15 85.1 207 37.2
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.1e-14 84.7 265 32.8
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 2.5e-14 83.6 186 36.0
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 4.3e-14 82.8 229 35.8
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 4.3e-14 82.8 254 32.3
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 5.6e-14 82.4 244 33.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 5.6e-14 82.4 167 41.9
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 9.6e-14 81.6 254 33.1
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 9.6e-14 81.6 132 45.5
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 2.8e-13 80.1 159 39.0
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 6.2e-13 79.0 271 32.1
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 1.1e-12 78.2 86 53.5
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 1.8e-12 77.4 172 38.4
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 3.1e-12 76.6 230 32.2
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 4.0e-12 76.3 76 53.9
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 4.0e-12 76.3 236 33.5
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 5.3e-12 75.9 93 49.5
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 6.9e-12 75.5 113 40.7
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 6.9e-12 75.5 172 36.6
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 6.9e-12 75.5 118 43.2
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 1.2e-11 74.7 165 37.6
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 2.6e-11 73.6 150 36.7
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 2.6e-11 73.6 173 38.7
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 2.6e-11 73.6 173 38.7
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 4.5e-11 72.8 154 41.6
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 4.5e-11 72.8 173 37.6
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 4.5e-11 72.8 305 29.8
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 7.6e-11 72.0 103 45.6
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 7.6e-11 72.0 237 30.8
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 1.3e-10 71.2 82 48.8
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.3e-10 71.2 152 40.1
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 2.2e-10 70.5 256 28.9
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 2.2e-10 70.5 109 44.0
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 2.9e-10 70.1 173 40.5
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 3.8e-10 69.7 101 44.6
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 3.8e-10 69.7 229 31.4
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 4.9e-10 69.3 165 38.2
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 4.9e-10 69.3 53 62.3
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 8.4e-10 68.6 146 34.2
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 1.1e-09 68.2 95 48.4
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 2.4e-09 67.0 73 50.7
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 2.4e-09 67.0 73 50.7
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 3.2e-09 66.6 79 46.8
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 4.2e-09 66.2 149 37.6
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 7.1e-09 65.5 245 29.4
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 7.1e-09 65.5 59 59.3
PGSC0003DMG400018718 Solanum tuberosum HOM05D004973 ORTHO05D006119 7.1e-09 65.5 59 59.3
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 1.6e-08 64.3 64 54.7
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 2.1e-08 63.9 70 52.9
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 3.5e-08 63.2 70 52.9
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 3.0e-07 60.1 128 35.9
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 6.7e-07 58.9 73 50.7
Ah.15g091990 Amaranthus hybridus HOM05D004973 ORTHO05D006119 1.9e-06 57.4 254 28.0
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 1.9e-06 57.4 172 36.0
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 2.5e-06 57.0 95 46.3
HPP92_014323 Vanilla planifolia HOM05D053846 ORTHO05D051553 7.4e-06 55.5 232 31.0
SEGI_03290 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 9.6e-06 55.1 217 26.3


User provided reference genes

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