Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000361 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 3.2e-26 120.9 58 100.0
CSS0007855 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 6.6e-24 113.2 57 96.5
CSS0050332 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 7.0e-18 93.2 60 80.0
CSS0000418 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D001007 5.6e-15 83.6 44 88.6
Rhsim05G0116300 Rhododendron simsii HOM05D000421 ORTHO05D001007 1.2e-12 75.9 44 77.3
vmacro19837 Vaccinium macrocarpon HOM05D000421 ORTHO05D001007 9.8e-12 72.8 44 75.0
Actinidia00155 Actinidia chinensis HOM05D000421 ORTHO05D001007 3.2e-10 67.8 51 62.7
Actinidia26188 Actinidia chinensis HOM05D000421 ORTHO05D001007 9.2e-10 66.2 44 70.5
Thecc.02G012700 Theobroma cacao HOM05D000421 ORTHO05D001007 3.5e-09 64.3 42 69.0
Dinv29669 Davidia involucrata HOM05D000421 ORTHO05D012543 1.0e-08 62.8 37 75.7
Duzib052G0429 Durio zibethinus HOM05D000421 ORTHO05D001007 1.0e-08 62.8 51 56.9
COL.COLO4_17686 Corchorus olitorius HOM05D000421 ORTHO05D001007 2.3e-08 61.6 51 58.8
Duzib248G1382 Durio zibethinus HOM05D000421 ORTHO05D001007 2.3e-08 61.6 50 58.0
THA.LOC104809032 Tarenaya hassleriana HOM05D000421 ORTHO05D001007 2.3e-08 61.6 50 58.0
RcHm_v2.0_Chr7g0220251 Rosa chinensis HOM05D000421 ORTHO05D001007 5.1e-08 60.5 46 58.7
Ciclev10001347m.g Citrus clementina HOM05D000421 ORTHO05D001007 6.6e-08 60.1 42 64.3
Gohir.A04G134300 Gossypium hirsutum HOM05D000421 ORTHO05D001007 6.6e-08 60.1 42 61.9
Gohir.D04G177500 Gossypium hirsutum HOM05D000421 ORTHO05D001007 6.6e-08 60.1 42 61.9
Gorai.012G170400 Gossypium raimondii HOM05D000421 ORTHO05D001007 6.6e-08 60.1 42 61.9
Prupe.1G583200 Prunus persica HOM05D000421 ORTHO05D001007 6.6e-08 60.1 42 61.9
Atru.chr6.352 Acer truncatum HOM05D000421 ORTHO05D001007 1.1e-07 59.3 42 64.3
Atru.chr6.401 Acer truncatum HOM05D000421 ORTHO05D001007 1.1e-07 59.3 42 64.3
MD15G1440900 Malus domestica HOM05D000421 ORTHO05D001007 1.5e-07 58.9 46 56.5
Cpa.g.sc113.3 Carica papaya HOM05D000421 ORTHO05D001007 1.9e-07 58.5 42 64.3
CANSAT01G0797 Cannabis sativa HOM05D000421 ORTHO05D001007 4.3e-07 57.4 41 63.4
MD08G1245700 Malus domestica HOM05D000421 ORTHO05D001007 4.3e-07 57.4 46 56.5
GSVIVG01023201001 Vitis vinifera HOM05D000421 ORTHO05D001007 4.3e-07 57.4 41 61.0
Hma1.2p1_0052F.1_g029910 Hydrangea macrophylla HOM05D000421 ORTHO05D001007 7.3e-07 56.6 56 48.2
TWI23G0288 Tripterygium wilfordii HOM05D000421 ORTHO05D001007 7.3e-07 56.6 44 52.3
Manes.10G110400 Manihot esculenta HOM05D000421 ORTHO05D001007 9.5e-07 56.2 43 62.8
Nn1g08745 Nelumbo nucifera HOM05D000074 ORTHO05D001793 9.5e-07 56.2 51 47.1
EL10Ac6g14015 Beta vulgaris HOM05D000421 ORTHO05D001007 2.1e-06 55.1 36 66.7
Dinv06975 Davidia involucrata HOM05D000421 ORTHO05D001007 2.1e-06 55.1 51 47.1
PGR142G0493 Punica granatum HOM05D000421 ORTHO05D001007 2.1e-06 55.1 41 58.5
Nn1g09789 Nelumbo nucifera HOM05D000421 ORTHO05D001007 2.8e-06 54.7 51 45.1
Nitab4.5_0001653g0070 Nicotiana tabacum HOM05D000421 ORTHO05D001007 2.8e-06 54.7 51 51.0
Potri.019G053000 Populus trichocarpa HOM05D000421 ORTHO05D001007 3.6e-06 54.3 44 52.3
AUR62029917 Chenopodium quinoa HOM05D000421 ORTHO05D001007 8.1e-06 53.1 57 45.6
AUR62033788 Chenopodium quinoa HOM05D000421 ORTHO05D001007 8.1e-06 53.1 57 45.6


User provided reference genes

Program Settings