Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 0.0e+00 1729.5 878 100.0
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 0.0e+00 1676.4 854 99.8
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1432.5 877 82.6
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 0.0e+00 1352.8 1035 70.0
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 0.0e+00 1290.8 874 74.8
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 0.0e+00 1279.2 812 79.4
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 0.0e+00 1279.2 865 74.5
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 0.0e+00 1267.3 865 74.7
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 0.0e+00 1263.8 870 73.9
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 0.0e+00 1257.3 877 73.0
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1256.1 873 73.0
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 0.0e+00 1254.6 874 72.9
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1248.4 874 72.5
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 0.0e+00 1246.5 874 72.5
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1244.6 859 73.3
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 0.0e+00 1238.4 868 72.7
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1229.9 879 71.8
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1229.5 879 71.7
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1228.4 874 71.5
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 0.0e+00 1226.8 815 76.0
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 0.0e+00 1226.1 867 71.9
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 0.0e+00 1222.2 874 69.6
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 0.0e+00 1216.1 863 71.3
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 0.0e+00 1215.3 869 70.7
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 0.0e+00 1214.9 875 69.0
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 0.0e+00 1214.1 875 70.2
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 0.0e+00 1209.9 875 71.1
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 0.0e+00 1194.5 844 71.9
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1194.5 874 70.9
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 0.0e+00 1189.1 874 69.7
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1189.1 874 69.8
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 0.0e+00 1186.0 864 70.1
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 0.0e+00 1183.7 917 67.3
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 0.0e+00 1179.9 870 67.1
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 0.0e+00 1179.9 875 68.6
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 0.0e+00 1178.7 875 69.1
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 0.0e+00 1176.8 874 68.0
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1176.4 875 68.7
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1173.7 849 69.5
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1171.4 905 67.2
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 0.0e+00 1171.4 866 69.4
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1170.6 871 68.1
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1169.5 905 67.1
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 0.0e+00 1169.1 870 68.0
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 0.0e+00 1167.1 870 68.3
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 0.0e+00 1161.4 870 68.2
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1159.4 920 66.0
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 0.0e+00 1159.4 855 67.6
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 0.0e+00 1156.4 868 68.3
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 0.0e+00 1156.0 866 68.4
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 0.0e+00 1155.6 875 67.2
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1155.6 868 67.1
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 1153.7 876 67.5
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 0.0e+00 1152.9 857 69.0
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 0.0e+00 1152.9 876 67.5
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1152.5 876 67.1
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 1150.6 876 67.5
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 0.0e+00 1150.6 868 68.1
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 0.0e+00 1149.0 869 66.7
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 0.0e+00 1147.1 874 66.2
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 0.0e+00 1147.1 868 67.9
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 0.0e+00 1142.9 889 66.6
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 0.0e+00 1140.2 862 68.1
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 0.0e+00 1137.1 883 66.8
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 0.0e+00 1130.2 875 66.5
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 0.0e+00 1130.2 855 67.0
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 0.0e+00 1127.1 866 65.6
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 0.0e+00 1120.9 925 62.8
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1119.0 862 65.5
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1114.0 926 64.0
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1110.1 849 67.3
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 0.0e+00 1108.6 857 64.5
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1105.1 862 65.1
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 0.0e+00 1100.9 845 67.0
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 6.0e-312 1074.7 864 63.7
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 1.7e-309 1065.8 780 68.1
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 1.2e-302 1043.1 774 68.3
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 5.9e-302 1040.8 886 62.8
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 1.6e-294 1016.1 866 60.9
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 1.6e-294 1016.1 857 61.5
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 6.2e-291 1004.2 715 72.4
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 4.4e-281 971.5 876 60.3
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 2.5e-247 859.4 859 52.3
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 9.3e-247 857.4 866 52.7
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 3.3e-228 795.8 623 65.3
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 8.5e-224 781.2 887 47.5
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 3.6e-222 775.8 879 47.9
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 4.4e-220 768.8 872 47.8
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 1.4e-210 737.3 546 70.3
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 1.8e-181 640.6 484 68.2
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 4.4e-180 636.0 494 66.4
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 9.8e-180 634.8 529 61.6
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 9.8e-180 634.8 871 44.1
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 5.4e-178 629.0 874 41.1
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 1.5e-167 594.3 891 39.5
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 2.6e-164 583.6 469 62.9
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.1e-151 541.6 831 38.7
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 6.9e-141 505.8 339 72.9
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 1.2e-140 505.0 418 64.6
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 2.1e-129 467.6 521 47.6
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.0e-128 463.8 333 70.3
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 3.4e-116 423.7 331 64.7
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 5.5e-114 416.4 600 42.7
Haze_04432 Corylus avellana HOM05D000329 ORTHO05D005330 1.2e-113 415.2 317 66.9
ClCG06G009480 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.5e-98 365.2 395 54.9
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 1.5e-98 365.2 385 54.0
Hma1.2p1_3491F.1_g336370 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 9.7e-95 352.4 213 77.9
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 7.0e-85 319.7 272 61.0
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 9.5e-82 309.3 543 38.7
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 9.5e-82 309.3 543 38.7
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 8.9e-80 302.8 212 69.3
Hma1.2p1_3491F.1_g336380 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 2.6e-79 301.2 228 70.2
Haze_04431 Corylus avellana HOM05D000329 ORTHO05D005330 1.6e-76 292.0 200 76.0
ClCG06G009470 Citrullus lanatus HOM05D000329 ORTHO05D005330 9.8e-71 272.7 200 66.0
Haze_04430 Corylus avellana HOM05D000329 ORTHO05D005330 8.3e-70 269.6 187 68.4
Rhsim05G0128300 Rhododendron simsii HOM05D000329 ORTHO05D005330 1.6e-65 255.4 496 40.5
QL93p0164_0019 Quercus lobata HOM05D000329 ORTHO05D005330 4.9e-62 243.8 175 66.9
Hma1.2p1_1512F.1_g287930 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 8.3e-62 243.0 165 74.5
CDE08G1568 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 1.1e-61 242.7 245 51.4
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 1.5e-58 232.3 163 71.8
Cre09.g404350 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D005330 8.9e-56 223.0 916 25.5
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-52 212.2 180 60.6
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-52 212.2 180 60.6
Sed0005472 Sechium edule HOM05D000329 ORTHO05D005330 1.3e-51 209.1 197 57.4
Nitab4.5_0003285g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 6.6e-51 206.8 211 54.0
Hma1.2p1_1512F.1_g287950 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 2.1e-49 201.8 127 79.5
SalBow6G5354 Salvia bowleyana HOM05D000329 ORTHO05D005330 1.1e-45 189.5 140 67.9
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.7e-43 182.2 144 63.2
Nitab4.5_0000432g0110 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.1e-34 152.9 121 64.5
COL.COLO4_15480 Corchorus olitorius HOM05D000329 ORTHO05D005330 3.3e-34 151.4 119 68.1
DCAR_000980 Daucus carota HOM05D000329 ORTHO05D005330 3.6e-33 147.9 103 69.9
AT4G38092 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 1.8e-32 145.6 103 71.8
Nitab4.5_0025717g0010 Nicotiana tabacum HOM05D000329 ORTHO05D005330 2.4e-32 145.2 175 46.3
Cpa.g.sc162.42 Carica papaya HOM05D000329 ORTHO05D028196 4.0e-32 144.4 89 82.0
ClCG06G009450 Citrullus lanatus HOM05D000329 ORTHO05D005330 7.6e-31 140.2 95 76.8
Rhsim10G0071600 Rhododendron simsii HOM05D000329 ORTHO05D005330 8.4e-30 136.7 78 88.5
Haze_04429 Corylus avellana HOM05D000329 ORTHO05D005330 5.6e-26 124.0 69 88.4
CAN.G155.4 Capsicum annuum HOM05D000329 ORTHO05D005330 1.8e-24 119.0 95 61.1
SHI23197 Sapria himalayana HOM05D000329 ORTHO05D005330 4.0e-24 117.9 136 41.9
MBI10_g44932_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D005330 1.2e-23 116.3 104 61.5
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 4.2e-21 107.8 851 21.3
Sed0009230 Sechium edule HOM05D000329 ORTHO05D028196 1.3e-19 102.8 74 73.0
SHI23198 Sapria himalayana HOM05D005377 ORTHO05D003034 2.5e-18 98.6 71 57.7
SHI23201 Sapria himalayana HOM05D000329 ORTHO05D005330 1.6e-17 95.9 75 60.0
SEGI_11781 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 6.9e-16 90.5 90 52.2
Lsat_1_v5_gn_7_52080 Lactuca sativa HOM05D001785 ORTHO05D001150 2.1e-12 79.0 46 76.1
SHI23206 Sapria himalayana HOM05D000329 ORTHO05D005330 3.9e-11 74.7 83 48.2
Solyc12g027560.1 Solanum lycopersicum HOM05D000329 ORTHO05D005330 1.6e-09 69.3 57 57.9
Lsat_1_v5_gn_8_51680 Lactuca sativa HOM05D000144 ORTHO05D005330 6.3e-09 67.4 72 44.4
Lsat_1_v5_gn_7_55340 Lactuca sativa HOM05D000144 ORTHO05D005330 2.4e-08 65.5 72 43.1
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 3.1e-08 65.1 42 64.3
Lsat_1_v5_gn_7_52100 Lactuca sativa HOM05D000329 ORTHO05D005330 4.1e-08 64.7 64 51.6
SHI23202 Sapria himalayana HOM05D000329 ORTHO05D005330 9.0e-08 63.5 77 48.1
ClCG06G009460 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.2e-07 63.2 36 83.3
AT3G05035 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 1.5e-07 62.8 38 78.9
A06p19390 Brassica napus HOM05D000329 ORTHO05D028196 4.5e-07 61.2 41 73.2
BraA01t03057Z Brassica rapa HOM05D000329 ORTHO05D028196 5.9e-07 60.8 41 73.2
SHI23196 Sapria himalayana HOM05D000329 ORTHO05D363981 3.8e-06 58.2 119 37.0
Lsat_1_v5_gn_2_33241 Lactuca sativa HOM05D000329 ORTHO05D005330 5.0e-06 57.8 40 62.5


User provided reference genes

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