Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 6.0e-55 217.2 108 100.0
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 9.7e-21 103.6 106 60.4
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.7e-20 102.8 104 61.5
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 8.2e-20 100.5 106 56.6
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 6.9e-19 97.4 103 55.3
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 1.2e-18 96.7 97 55.7
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.0e-18 95.9 107 58.9
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 5.0e-17 91.3 106 51.9
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 2.7e-15 85.5 67 65.7
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 2.7e-15 85.5 92 60.9
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 8.0e-15 84.0 103 51.5
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 6.7e-14 80.9 108 50.0
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 1.1e-13 80.1 108 50.0
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 1.1e-13 80.1 103 47.6
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 3.3e-13 78.6 100 49.0
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 5.7e-13 77.8 104 53.8
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 6.3e-12 74.3 103 47.6
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 8.2e-12 73.9 104 47.1
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 1.4e-11 73.2 62 64.5
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 1.8e-11 72.8 105 45.7
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 1.8e-11 72.8 64 60.9
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 2.4e-11 72.4 105 45.7
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 3.1e-11 72.0 59 62.7
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 4.1e-11 71.6 60 60.0
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 4.1e-11 71.6 95 47.4
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 5.3e-11 71.2 105 48.6
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 5.3e-11 71.2 103 41.7
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 9.1e-11 70.5 96 44.8
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 9.1e-11 70.5 97 47.4
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 9.1e-11 70.5 97 46.4
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 2.0e-10 69.3 106 43.4
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 2.0e-10 69.3 96 43.8
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 3.5e-10 68.6 58 58.6
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 4.5e-10 68.2 83 50.6
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 4.5e-10 68.2 103 44.7
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 5.9e-10 67.8 112 43.8
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 5.9e-10 67.8 111 43.2
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 7.7e-10 67.4 109 41.3
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 7.7e-10 67.4 114 42.1
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 7.7e-10 67.4 114 42.1
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 1.0e-09 67.0 102 40.2
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 1.0e-09 67.0 58 58.6
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 1.0e-09 67.0 60 58.3
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 1.0e-09 67.0 89 47.2
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 1.3e-09 66.6 63 58.7
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 1.3e-09 66.6 64 62.5
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 2.2e-09 65.9 121 41.3
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.9e-09 65.5 58 56.9
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.9e-09 65.5 99 43.4
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 2.9e-09 65.5 95 44.2
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 2.9e-09 65.5 71 52.1
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 2.9e-09 65.5 100 44.0
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 3.8e-09 65.1 100 45.0
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 3.8e-09 65.1 60 56.7
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 5.0e-09 64.7 102 44.1
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 5.0e-09 64.7 109 44.0
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 5.0e-09 64.7 88 46.6
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 6.5e-09 64.3 102 46.1
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 8.5e-09 63.9 100 43.0
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 1.1e-08 63.5 96 44.8
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 1.5e-08 63.2 108 42.6
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 2.5e-08 62.4 71 50.7
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.5e-08 62.4 88 45.5
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 2.5e-08 62.4 61 55.7
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 3.2e-08 62.0 97 45.4
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 4.2e-08 61.6 61 55.7
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 7.2e-08 60.8 87 46.0
SalBow6G0491 Salvia bowleyana HOM05D007107 ORTHO05D009198 9.4e-08 60.5 67 55.2
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 2.1e-07 59.3 103 35.9
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 3.6e-07 58.5 89 44.9
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 4.7e-07 58.2 118 37.3
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 1.0e-06 57.0 105 41.0
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 1.4e-06 56.6 101 36.6
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.4e-06 56.6 101 36.6
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 1.8e-06 56.2 105 41.9
Oeu008318.1 Olea europaea HOM05D007107 ORTHO05D009198 6.7e-06 54.3 74 47.3
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 6.7e-06 54.3 85 44.7


User provided reference genes

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