Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 7.5e-172 607.1 302 100.0
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 1.6e-169 599.4 302 98.7
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 7.2e-114 414.5 310 67.7
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 6.5e-107 391.3 308 62.3
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 8.5e-107 391.0 300 64.0
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 1.1e-106 390.6 302 64.9
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 1.9e-106 389.8 310 64.2
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 1.4e-104 383.6 312 61.9
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 1.4e-104 383.6 312 61.9
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 4.0e-104 382.1 300 64.3
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 3.3e-103 379.0 301 61.1
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 9.7e-103 377.5 300 61.0
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 1.3e-102 377.1 320 60.0
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 3.7e-102 375.6 301 63.5
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 3.1e-101 372.5 307 60.3
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 4.1e-101 372.1 300 59.3
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 5.3e-101 371.7 297 64.0
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 7.0e-101 371.3 297 63.0
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 2.0e-100 369.8 300 63.0
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 2.6e-100 369.4 306 57.8
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 3.5e-100 369.0 306 60.5
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 4.5e-100 368.6 297 63.0
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 7.7e-100 367.9 297 62.6
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 1.0e-99 367.5 321 58.3
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 1.3e-99 367.1 327 57.8
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 1.3e-99 367.1 301 58.8
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 2.2e-99 366.3 300 61.3
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 5.0e-99 365.2 308 60.4
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 6.5e-99 364.8 309 60.8
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 8.5e-99 364.4 301 61.8
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 8.5e-99 364.4 300 62.3
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 1.1e-98 364.0 300 62.3
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 1.9e-98 363.2 309 60.5
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 4.2e-98 362.1 299 63.2
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 7.2e-98 361.3 368 52.2
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 1.6e-97 360.1 308 59.4
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 2.1e-97 359.8 303 60.4
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 2.1e-97 359.8 307 58.6
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 2.7e-97 359.4 300 58.3
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 3.6e-97 359.0 297 59.3
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 4.7e-97 358.6 314 59.2
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 8.0e-97 357.8 297 59.9
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 1.0e-96 357.5 309 58.3
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 1.8e-96 356.7 297 59.9
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 8.8e-96 354.4 302 59.3
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 5.7e-95 351.7 298 59.1
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 1.7e-94 350.1 297 58.9
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 2.2e-94 349.7 305 59.3
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 2.8e-94 349.4 301 57.1
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 3.7e-94 349.0 297 58.9
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 6.3e-94 348.2 241 70.5
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 3.1e-93 345.9 289 61.9
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 4.5e-92 342.0 310 58.1
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 4.5e-92 342.0 324 54.9
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 1.7e-91 340.1 298 57.4
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 2.2e-91 339.7 317 57.4
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 2.2e-91 339.7 310 57.1
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 2.9e-91 339.3 301 57.1
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 6.5e-91 338.2 280 61.8
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 1.5e-90 337.0 297 55.6
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 4.2e-90 335.5 322 54.0
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 1.2e-89 334.0 299 56.9
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 1.6e-89 333.6 307 56.7
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 2.1e-89 333.2 299 56.2
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 2.1e-89 333.2 343 52.2
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 8.0e-89 331.3 299 55.9
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 4.0e-88 328.9 299 55.2
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 6.8e-88 328.2 275 58.5
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 3.4e-87 325.9 305 55.1
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 1.7e-86 323.6 311 55.9
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 4.9e-86 322.0 307 55.4
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 1.8e-85 320.1 309 56.6
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 2.3e-83 313.2 305 52.8
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.9e-82 310.1 316 52.2
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 2.1e-81 306.6 297 54.5
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 2.6e-79 299.7 334 49.4
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 5.7e-79 298.5 177 79.1
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 4.9e-78 295.4 282 57.4
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 2.0e-76 290.0 318 49.4
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 4.6e-76 288.9 227 60.4
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 7.8e-76 288.1 220 60.9
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 5.0e-75 285.4 328 47.6
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 1.5e-74 283.9 279 51.3
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 7.3e-74 281.6 220 62.7
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 1.2e-73 280.8 224 60.3
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 8.9e-72 274.6 221 58.8
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 7.5e-71 271.6 276 49.6
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 1.1e-69 267.7 181 70.7
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 1.4e-69 267.3 278 53.2
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 6.0e-68 261.9 236 63.1
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 2.3e-67 260.0 388 41.2
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 2.4e-61 240.0 305 42.3
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 2.1e-60 236.9 308 40.6
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 1.7e-59 233.8 365 39.5
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 2.4e-53 213.4 210 55.2
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 9.2e-53 211.5 323 40.6
Cpa.g.sc6.264 Carica papaya HOM05D006469 ORTHO05D008034 3.1e-48 196.4 116 73.3
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 5.4e-45 185.7 258 44.2
Nitab4.5_0000438g0160 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.6e-44 184.1 185 49.7
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 2.1e-44 183.7 210 50.0
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 5.1e-43 179.1 175 48.0
TAR376G1090 Trochodendron aralioides HOM05D006469 ORTHO05D008034 4.3e-42 176.0 104 76.9
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 8.1e-41 171.8 243 43.2
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 6.9e-40 168.7 163 58.9
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 4.6e-36 156.0 176 50.6
SEGI_12964 Sequoiadendron giganteum HOM05D006469 ORTHO05D008034 1.7e-35 154.1 159 44.0
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 6.6e-35 152.1 189 46.0
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 9.0e-32 141.7 289 37.4
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 9.0e-32 141.7 289 37.4
Sabra07G0049000 Salix brachista HOM05D006469 ORTHO05D008034 4.5e-31 139.4 92 66.3
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 3.2e-29 133.3 229 41.5
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 1.6e-28 131.0 158 48.7
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 2.3e-27 127.1 174 46.6
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 5.6e-26 122.5 211 40.3
MD15G1244100 Malus domestica HOM05D006469 ORTHO05D008034 1.6e-25 120.9 87 67.8
CDE02G4028 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 2.2e-22 110.5 94 57.4
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 2.1e-20 104.0 161 44.7
Sabra05G0092400 Salix brachista HOM05D006469 ORTHO05D008034 5.0e-14 82.8 173 31.8
COL.COLO4_22441 Corchorus olitorius HOM05D006469 ORTHO05D008034 9.7e-10 68.6 76 48.7
Mapoly0123s0005 Marchantia polymorpha HOM05D005677 ORTHO05D006966 2.2e-09 67.4 136 36.0
SMO364G0506 Selaginella moellendorffii HOM05D005677 ORTHO05D006966 4.8e-09 66.2 126 34.1
LjContig00448g0024692 Lotus japonicus HOM05D005677 ORTHO05D006966 2.4e-08 63.9 137 31.4
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 2.4e-08 63.9 106 36.8
Ah.03g140850 Amaranthus hybridus HOM05D005677 ORTHO05D006966 6.9e-08 62.4 190 27.9
SalBow5G4467 Salvia bowleyana HOM05D005677 ORTHO05D006966 6.9e-08 62.4 112 34.8
FAN19G0062 Fragaria x ananassa HOM05D005677 ORTHO05D006966 1.2e-07 61.6 106 34.9
FAN23G0294 Fragaria x ananassa HOM05D005677 ORTHO05D006966 1.2e-07 61.6 154 28.6
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 1.2e-07 61.6 106 34.9
Duzib147G0715 Durio zibethinus HOM05D005677 ORTHO05D006966 1.5e-07 61.2 117 30.8
Migut.L00520 Erythranthe guttata HOM05D005677 ORTHO05D006966 1.5e-07 61.2 133 30.8
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 1.5e-07 61.2 106 34.9
Gohir.D11G190800 Gossypium hirsutum HOM05D005677 ORTHO05D006966 1.5e-07 61.2 141 30.5
Potri.007G025600 Populus trichocarpa HOM05D005677 ORTHO05D006966 1.5e-07 61.2 138 30.4
TAR625G0490 Trochodendron aralioides HOM05D005677 ORTHO05D006966 1.5e-07 61.2 120 35.0
FAN28G0162 Fragaria x ananassa HOM05D005677 ORTHO05D006966 2.0e-07 60.8 106 34.9
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 2.0e-07 60.8 109 34.9
Aa31LG4G18970 Aethionema arabicum HOM05D005677 ORTHO05D006966 2.6e-07 60.5 115 34.8
Nitab4.5_0000438g0170 Nicotiana tabacum HOM05D006469 ORTHO05D008034 2.6e-07 60.5 76 46.1
Oeu042263.1 Olea europaea HOM05D005677 ORTHO05D006966 3.4e-07 60.1 142 30.3
Oeu041446.1 Olea europaea HOM05D005677 ORTHO05D006966 5.9e-07 59.3 131 30.5
TWI53G0229 Tripterygium wilfordii HOM05D005677 ORTHO05D006966 5.9e-07 59.3 159 27.0
Atru.chr3.573 Acer truncatum HOM05D005677 ORTHO05D006966 7.7e-07 58.9 113 31.9
CANSAT01G0942 Cannabis sativa HOM05D005677 ORTHO05D006966 1.0e-06 58.5 117 35.0
HanXRQChr09g0261461 Helianthus annuus HOM05D005677 ORTHO05D006966 1.0e-06 58.5 161 26.1
Cpa.g.sc6.112 Carica papaya HOM05D005677 ORTHO05D006966 1.3e-06 58.2 137 31.4
Ca_22266_v3 Cicer arietinum L. HOM05D005677 ORTHO05D006966 1.7e-06 57.8 102 35.3
Ca_22280_v3 Cicer arietinum L. HOM05D005677 ORTHO05D006966 1.7e-06 57.8 102 35.3
ClCG01G019540 Citrullus lanatus HOM05D005677 ORTHO05D006966 1.7e-06 57.8 112 34.8
ECA232G2278 Erigeron canadensis HOM05D005677 ORTHO05D006966 1.7e-06 57.8 177 29.4
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 1.7e-06 57.8 211 28.0
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 2.2e-06 57.4 120 33.3
Gohir.A11G184300 Gossypium hirsutum HOM05D005677 ORTHO05D006966 2.2e-06 57.4 102 34.3
Gorai.007G203300 Gossypium raimondii HOM05D005677 ORTHO05D006966 2.2e-06 57.4 102 34.3
PSO210G3110 Papaver somniferum HOM05D005677 ORTHO05D006966 2.2e-06 57.4 106 34.9
Psat4g079800 Pisum sativum HOM05D005677 ORTHO05D006966 2.2e-06 57.4 141 31.2
CsaV3_6G046230 Cucumis sativus L. HOM05D005677 ORTHO05D006966 2.9e-06 57.0 112 34.8
Lj2P453T29 Lonicera japonica HOM05D005677 ORTHO05D006966 2.9e-06 57.0 102 34.3
HPP92_022639 Vanilla planifolia HOM05D006469 ORTHO05D008034 2.9e-06 57.0 91 37.4
Aa31LG1G15100 Aethionema arabicum HOM05D005677 ORTHO05D006966 3.8e-06 56.6 114 33.3
arahy.Tifrunner.gnm1.ann1.6977IM Arachis hypogaea HOM05D005677 ORTHO05D006966 3.8e-06 56.6 102 32.4
Ciclev10026228m.g Citrus clementina HOM05D005677 ORTHO05D006966 3.8e-06 56.6 108 35.2
Glyma.02G057000 Glycine max HOM05D005677 ORTHO05D006966 3.8e-06 56.6 113 30.1
Nn2g12315 Nelumbo nucifera HOM05D005677 ORTHO05D006966 3.8e-06 56.6 106 34.9
Prupe.7G154600 Prunus persica HOM05D005677 ORTHO05D006966 3.8e-06 56.6 102 35.3
CiPaw.03G182300 Carya illinoinensis HOM05D001602 ORTHO05D001470 5.0e-06 56.2 140 30.7
Sed0020674 Sechium edule HOM05D005677 ORTHO05D006966 5.0e-06 56.2 115 33.0
AT3G50850 Arabidopsis thaliana HOM05D005677 ORTHO05D006966 6.5e-06 55.8 111 31.5
MELO3C007826.2 Cucumis melo HOM05D005677 ORTHO05D006966 6.5e-06 55.8 112 34.8
Eucgr.L02813 Eucalyptus grandis HOM05D005677 ORTHO05D006966 6.5e-06 55.8 116 34.5
Thecc.01G035800 Theobroma cacao HOM05D005677 ORTHO05D006966 6.5e-06 55.8 112 32.1
Psat4g092640 Pisum sativum HOM05D005677 ORTHO05D006966 8.5e-06 55.5 102 35.3
TWI34G1198 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 8.5e-06 55.5 108 35.2
Zm00001eb324730 Zea mays HOM05D005677 ORTHO05D006966 8.5e-06 55.5 109 32.1


User provided reference genes

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