Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 3.8e-157 558.1 285 100.0
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 2.6e-81 306.2 285 63.2
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 9.2e-79 297.7 299 59.5
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 9.2e-79 297.7 307 58.0
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 5.6e-76 288.5 285 58.6
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 3.2e-71 272.7 284 55.6
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 4.2e-71 272.3 285 56.8
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 5.4e-71 271.9 286 55.9
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 7.1e-71 271.6 285 56.8
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 2.7e-70 269.6 158 87.3
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 2.7e-70 269.6 288 56.9
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 6.0e-70 268.5 285 56.1
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 3.0e-69 266.2 267 57.3
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 5.1e-69 265.4 152 86.2
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 6.6e-69 265.0 296 54.7
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 8.7e-69 264.6 288 53.8
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 1.5e-68 263.8 286 55.9
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 1.9e-68 263.5 287 55.4
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 3.3e-68 262.7 285 54.0
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 3.3e-68 262.7 293 54.6
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 3.3e-68 262.7 290 54.5
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 7.3e-68 261.5 291 54.3
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 4.8e-67 258.8 153 85.0
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 4.8e-67 258.8 287 54.4
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 8.1e-67 258.1 283 55.1
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 1.1e-66 257.7 312 52.2
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.4e-66 257.3 286 53.8
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 2.4e-66 256.5 283 54.8
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 4.0e-66 255.8 153 85.6
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 9.0e-66 254.6 283 54.8
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 1.2e-65 254.2 283 54.1
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 2.0e-65 253.4 283 53.7
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.0e-65 253.4 153 84.3
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 2.6e-65 253.1 292 51.7
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 2.6e-65 253.1 292 52.4
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.6e-65 253.1 153 84.3
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 2.6e-65 253.1 293 54.6
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 3.4e-65 252.7 285 51.9
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 3.4e-65 252.7 292 52.4
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 3.4e-65 252.7 292 52.4
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 4.5e-65 252.3 151 84.1
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 7.6e-65 251.5 291 52.9
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 9.9e-65 251.1 293 51.9
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 8.4e-64 248.1 206 63.6
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 1.9e-63 246.9 277 52.3
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 3.2e-63 246.1 291 51.5
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 4.2e-63 245.7 301 50.5
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 5.4e-63 245.4 283 53.4
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 7.1e-63 245.0 286 53.8
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 1.2e-62 244.2 151 80.8
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 1.6e-62 243.8 194 68.0
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 2.1e-62 243.4 290 51.4
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 2.7e-62 243.0 152 83.6
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 3.5e-62 242.7 154 79.2
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 3.5e-62 242.7 147 83.7
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 7.9e-62 241.5 283 53.4
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 1.3e-61 240.7 283 52.7
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 1.8e-61 240.4 294 50.3
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 1.8e-61 240.4 277 52.7
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 2.3e-61 240.0 297 49.8
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 3.0e-61 239.6 299 48.5
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 3.0e-61 239.6 282 51.4
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 3.9e-61 239.2 290 50.0
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 5.1e-61 238.8 154 76.6
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 6.7e-61 238.4 153 79.1
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 8.7e-61 238.0 299 48.8
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 1.1e-60 237.7 187 67.9
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 1.9e-60 236.9 258 53.5
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.3e-60 236.1 149 81.2
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 4.3e-60 235.7 282 50.7
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 4.3e-60 235.7 258 53.1
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 7.4e-60 235.0 154 76.0
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 9.6e-60 234.6 289 50.2
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 9.6e-60 234.6 288 50.3
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 2.1e-59 233.4 153 78.4
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 1.1e-58 231.1 280 50.0
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 1.1e-58 231.1 292 47.3
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 2.4e-58 229.9 153 75.2
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 3.1e-58 229.6 285 49.1
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 9.0e-58 228.0 285 48.4
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.2e-57 227.6 285 48.8
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 7.6e-57 224.9 262 50.0
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 2.2e-56 223.4 282 49.3
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 4.9e-56 222.2 284 48.6
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 2.5e-55 219.9 300 47.0
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 2.5e-55 219.9 163 69.9
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 3.2e-55 219.5 151 72.8
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 4.2e-55 219.2 150 72.0
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 2.7e-54 216.5 291 46.4
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 9.6e-52 208.0 285 47.7
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 4.8e-51 205.7 152 67.1
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 6.2e-51 205.3 152 67.8
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 1.5e-49 200.7 282 46.8
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 1.5e-49 200.7 152 68.4
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 2.2e-48 196.8 154 66.9
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 1.8e-45 187.2 122 80.3
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 5.7e-44 182.2 274 47.1
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 3.7e-43 179.5 285 42.8
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 1.0e-40 171.4 153 57.5
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 4.2e-39 166.0 237 43.5
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 2.1e-38 163.7 153 57.5
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.8e-37 160.6 146 65.1
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 7.4e-36 155.2 90 84.4
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 1.7e-32 144.1 148 49.3
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.1e-31 141.4 81 86.4
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 3.2e-31 139.8 79 87.3
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 4.1e-26 122.9 163 42.3
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 1.5e-25 120.9 202 42.1
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 1.3e-24 117.9 155 44.5
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 6.5e-24 115.5 72 81.9
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 3.0e-21 106.7 97 59.8
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.1e-20 104.8 78 69.2
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 1.1e-20 104.8 193 39.9
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 8.2e-19 98.6 70 74.3
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 5.3e-18 95.9 146 41.1
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.2e-17 94.7 61 73.8
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 3.2e-15 86.7 226 29.6
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 7.5e-12 75.5 81 60.5
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 4.1e-10 69.7 66 51.5
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 3.5e-09 66.6 61 59.0
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 8.0e-06 55.5 74 39.2


User provided reference genes

Program Settings