Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.7e-31 138.7 69 100.0
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.7e-31 138.7 69 100.0
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.9e-31 137.5 69 98.6
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 2.5e-22 108.2 69 73.9
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.1e-20 102.8 65 75.4
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 3.1e-20 101.3 66 71.2
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.9e-20 100.1 64 75.0
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 6.9e-20 100.1 64 75.0
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 6.9e-20 100.1 66 71.2
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 8.9e-20 99.8 66 74.2
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 1.2e-19 99.4 65 73.8
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 1.2e-19 99.4 66 68.2
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.2e-19 99.4 66 71.2
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.5e-19 99.0 65 73.8
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.6e-19 98.2 66 75.8
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 3.4e-19 97.8 64 73.4
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 3.4e-19 97.8 66 74.2
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.4e-19 97.8 64 73.4
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 3.4e-19 97.8 66 71.2
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.4e-19 97.8 66 74.2
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 3.4e-19 97.8 66 72.7
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 4.4e-19 97.4 69 75.4
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 5.8e-19 97.1 64 71.9
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 7.6e-19 96.7 66 69.7
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 7.6e-19 96.7 68 70.6
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 9.9e-19 96.3 69 69.6
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 9.9e-19 96.3 64 71.9
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 1.3e-18 95.9 66 72.7
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.7e-18 95.5 64 70.3
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.7e-18 95.5 66 71.2
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 2.9e-18 94.7 66 66.7
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.9e-18 94.7 65 69.2
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 2.9e-18 94.7 64 70.3
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 6.4e-18 93.6 69 68.1
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 6.4e-18 93.6 69 68.1
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.4e-18 93.6 60 71.7
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.4e-18 93.6 60 71.7
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.4e-17 92.4 62 75.8
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.4e-17 91.7 69 68.1
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 3.2e-17 91.3 65 64.6
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 3.2e-17 91.3 66 72.7
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.2e-17 90.9 67 64.2
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 5.4e-17 90.5 62 71.0
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 7.1e-17 90.1 66 69.7
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 7.1e-17 90.1 67 61.2
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 7.1e-17 90.1 57 77.2
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 7.1e-17 90.1 57 77.2
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 7.1e-17 90.1 64 67.2
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 7.1e-17 90.1 64 67.2
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 9.3e-17 89.7 61 72.1
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 9.3e-17 89.7 62 74.2
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 9.3e-17 89.7 68 67.6
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.2e-16 89.4 64 65.6
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.2e-16 89.4 65 66.2
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.6e-16 89.0 65 66.2
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.6e-16 89.0 65 66.2
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.6e-16 89.0 66 63.6
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 2.1e-16 88.6 66 68.2
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 2.1e-16 88.6 62 74.2
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 2.7e-16 88.2 68 66.2
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 3.5e-16 87.8 68 64.7
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.6e-16 87.4 67 65.7
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.0e-16 87.0 58 74.1
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 7.8e-16 86.7 65 60.0
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.0e-15 86.3 59 69.5
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 1.3e-15 85.9 58 72.4
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.7e-15 85.5 66 66.7
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.7e-15 85.5 66 65.2
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.0e-15 84.7 58 72.4
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 3.9e-15 84.3 66 60.6
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.9e-15 84.3 59 66.1
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 3.9e-15 84.3 66 66.7
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.1e-15 84.0 65 60.0
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.1e-15 84.0 65 60.0
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 6.6e-15 83.6 62 69.4
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 8.7e-15 83.2 54 75.9
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.1e-14 82.8 68 58.8
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.1e-14 82.8 68 58.8
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.1e-14 82.8 68 58.8
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.1e-14 82.8 62 66.1
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.1e-14 82.8 62 66.1
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.1e-14 82.8 66 59.1
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.1e-14 82.8 58 72.4
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.1e-14 82.8 58 69.0
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.1e-14 82.8 58 69.0
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 2.5e-14 81.6 66 59.1
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 2.5e-14 81.6 66 59.1
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 2.5e-14 81.6 61 67.2
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 2.5e-14 81.6 61 68.9
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 2.5e-14 81.6 62 66.1
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 3.3e-14 81.3 66 57.6
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.3e-14 81.3 58 67.2
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 3.3e-14 81.3 68 63.2
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.3e-14 80.9 66 63.6
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.3e-14 80.9 66 63.6
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 4.3e-14 80.9 62 66.1
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.3e-14 80.9 62 64.5
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 4.3e-14 80.9 57 64.9
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 5.6e-14 80.5 68 55.9
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 5.6e-14 80.5 59 67.8
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 5.6e-14 80.5 58 70.7
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 5.6e-14 80.5 66 57.6
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 7.3e-14 80.1 66 60.6
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 7.3e-14 80.1 66 63.6
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 7.3e-14 80.1 63 63.5
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 9.6e-14 79.7 68 57.4
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 9.6e-14 79.7 68 55.9
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 9.6e-14 79.7 66 57.6
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 9.6e-14 79.7 51 74.5
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 9.6e-14 79.7 58 67.2
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.3e-13 79.3 62 64.5
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.3e-13 79.3 62 64.5
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 1.3e-13 79.3 66 62.1
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 1.6e-13 79.0 57 66.7
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.6e-13 79.0 57 66.7
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 2.1e-13 78.6 66 59.1
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.8e-13 78.2 62 66.1
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 3.6e-13 77.8 65 55.4
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 4.8e-13 77.4 64 59.4
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.2e-13 77.0 64 62.5
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.1e-12 76.3 62 66.1
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 2.4e-12 75.1 51 68.6
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 3.1e-12 74.7 62 59.7
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 3.1e-12 74.7 62 58.1
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.0e-12 74.3 62 64.5
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 6.9e-12 73.6 62 62.9
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 6.9e-12 73.6 68 52.9
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 6.9e-12 73.6 68 52.9
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 6.9e-12 73.6 68 54.4
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 1.2e-11 72.8 57 57.9
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 1.2e-11 72.8 57 57.9
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 2.0e-11 72.0 68 51.5
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 2.0e-11 72.0 68 51.5
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 2.0e-11 72.0 68 51.5
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 3.4e-11 71.2 58 58.6
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 3.4e-11 71.2 58 58.6
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 3.4e-11 71.2 62 61.3
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 3.4e-11 71.2 66 56.1
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 3.4e-11 71.2 50 66.0
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 4.5e-11 70.9 62 59.7
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 7.6e-11 70.1 62 58.1
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 1.3e-10 69.3 62 51.6
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 1.7e-10 68.9 62 53.2
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 3.8e-10 67.8 60 53.3
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 4.9e-10 67.4 39 87.2
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.9e-10 67.4 62 50.0
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 1.9e-09 65.5 57 57.9
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 7.1e-09 63.5 62 48.4
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.2e-08 62.8 56 60.7
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.6e-08 62.4 53 60.4
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 2.1e-08 62.0 61 55.7
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 2.7e-08 61.6 53 58.5
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.7e-08 61.6 53 60.4
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 3.5e-08 61.2 66 51.5
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 3.5e-08 61.2 59 57.6
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 4.6e-08 60.8 57 57.9
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 6.0e-08 60.5 57 57.9
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 1.0e-07 59.7 57 56.1
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 1.8e-07 58.9 57 56.1
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 1.8e-07 58.9 57 57.9
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 1.8e-07 58.9 57 59.6
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 1.8e-07 58.9 57 56.1
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.0e-07 58.2 53 58.5
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 8.7e-07 56.6 62 51.6
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.1e-06 56.2 55 50.9


User provided reference genes

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