Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.5e-79 297.0 171 100.0
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.8e-76 287.0 171 97.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 7.3e-63 244.2 171 84.8
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.1e-62 242.7 165 84.8
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 4.6e-57 224.9 171 76.6
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.0e-56 223.8 176 76.7
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 8.6e-56 220.7 170 78.2
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.1e-55 220.3 171 77.2
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.5e-55 219.2 177 75.7
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 3.3e-55 218.8 168 78.0
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.3e-55 218.4 172 78.5
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 7.3e-55 217.6 161 75.8
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.6e-54 216.5 170 76.5
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 2.1e-54 216.1 170 75.3
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.8e-53 213.0 170 75.9
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 2.3e-53 212.6 166 76.5
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 3.1e-53 212.2 168 75.6
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 8.9e-53 210.7 161 75.2
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.2e-52 210.3 166 75.9
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 7.6e-52 207.6 169 73.4
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.9e-51 204.9 169 72.2
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.4e-51 204.5 169 72.2
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.1e-50 203.8 169 72.2
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.1e-50 203.8 169 72.2
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.4e-50 203.4 177 58.8
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 5.4e-50 201.4 169 71.6
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.1e-49 199.5 172 70.9
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 2.7e-49 199.1 172 70.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 6.0e-49 198.0 171 73.1
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.0e-48 197.2 149 79.2
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 2.3e-48 196.1 240 46.7
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 5.1e-48 194.9 160 75.6
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 6.6e-48 194.5 161 61.5
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 5.6e-47 191.4 158 72.2
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-46 190.3 170 59.4
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 2.8e-46 189.1 170 58.8
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 3.6e-46 188.7 163 58.9
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 3.6e-46 188.7 146 76.7
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 4.7e-46 188.3 174 55.2
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.7e-46 188.3 174 55.2
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.7e-46 188.3 174 55.2
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 4.7e-46 188.3 169 68.0
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.1e-45 187.2 168 71.4
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.8e-45 186.4 174 55.2
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.4e-45 186.0 166 56.6
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 5.2e-45 184.9 165 69.1
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.8e-45 184.5 164 59.1
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 6.8e-45 184.5 170 65.9
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.2e-44 183.7 162 59.9
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.2e-44 183.7 174 66.1
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.2e-44 183.7 164 71.3
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.5e-44 183.3 159 71.1
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 7.6e-44 181.0 168 70.8
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 9.9e-44 180.6 158 68.4
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 9.9e-44 180.6 168 56.0
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.2e-43 179.5 178 69.7
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 6.4e-43 177.9 175 67.4
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 6.4e-43 177.9 159 56.0
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 6.4e-43 177.9 149 73.8
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 8.4e-43 177.6 174 67.8
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.4e-43 177.6 174 52.9
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.1e-42 177.2 167 68.3
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.1e-42 177.2 167 68.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.1e-42 177.2 167 68.3
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.1e-42 177.2 164 69.5
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.1e-42 177.2 177 64.4
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.1e-42 177.2 177 65.5
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.4e-42 176.8 167 67.1
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 3.2e-42 175.6 167 67.1
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 7.1e-42 174.5 183 54.6
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 7.1e-42 174.5 167 68.9
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 7.1e-42 174.5 172 64.5
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.2e-41 173.7 172 64.5
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.2e-41 173.7 172 64.5
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.2e-41 173.7 154 65.6
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.7e-41 172.6 175 52.0
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 2.7e-41 172.6 174 62.6
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.6e-41 171.8 172 66.3
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 6.0e-41 171.4 177 65.5
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 6.0e-41 171.4 177 65.5
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 7.8e-41 171.0 150 70.7
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.0e-40 170.6 174 53.4
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.7e-40 169.9 173 62.4
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.7e-40 169.9 172 55.2
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.0e-40 169.1 150 70.0
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.9e-40 168.7 164 67.7
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.9e-40 168.7 173 64.2
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.9e-40 168.7 144 71.5
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.1e-40 168.3 173 62.4
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 6.6e-40 167.9 165 67.3
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.1e-39 167.2 165 64.8
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.1e-39 167.2 174 63.8
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.5e-39 166.0 175 63.4
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 3.3e-39 165.6 169 60.9
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 5.6e-39 164.9 166 67.5
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 5.6e-39 164.9 166 67.5
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 7.3e-39 164.5 174 62.6
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 9.6e-39 164.1 158 65.8
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.6e-38 163.3 173 49.7
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.6e-38 163.3 174 63.8
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 2.1e-38 162.9 172 65.1
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.1e-38 162.9 170 64.1
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 2.8e-38 162.5 173 49.1
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.8e-37 159.8 173 61.8
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.4e-37 159.5 174 61.5
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 4.0e-37 158.7 174 50.0
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 5.3e-37 158.3 127 76.4
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 6.9e-37 157.9 158 66.5
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 6.9e-37 157.9 160 64.4
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 6.9e-37 157.9 159 66.0
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 2.0e-36 156.4 166 63.3
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.4e-36 155.6 159 64.2
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 3.4e-36 155.6 160 63.1
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 4.4e-36 155.2 159 59.7
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 7.6e-36 154.5 151 70.2
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 9.9e-36 154.1 166 65.7
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 9.9e-36 154.1 158 62.7
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.8e-35 152.1 174 48.9
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 8.4e-35 151.0 161 65.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.1e-34 150.6 158 62.0
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.2e-33 147.1 154 63.0
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.6e-33 146.7 154 63.0
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 2.1e-33 146.4 151 50.3
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.0e-32 144.1 82 78.0
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.9e-31 139.8 160 62.5
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.6e-30 136.7 159 61.0
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 2.8e-30 136.0 129 55.8
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 6.9e-29 131.3 166 58.4
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 9.0e-29 131.0 168 58.3
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.6e-28 129.4 159 59.1
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.6e-28 129.4 166 57.8
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.6e-28 129.4 166 57.8
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 3.4e-28 129.0 107 55.1
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.4e-28 129.0 160 60.0
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 3.4e-28 129.0 166 57.2
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 5.8e-28 128.3 164 57.9
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 9.9e-28 127.5 164 57.9
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.7e-27 126.7 125 70.4
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 2.4e-26 122.9 167 55.7
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 4.2e-26 122.1 79 67.1
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 5.4e-26 121.7 140 61.4
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 2.1e-25 119.8 99 87.9
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.5e-23 113.6 129 48.8
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 3.7e-22 109.0 62 69.4
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 9.0e-21 104.4 135 45.2
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.5e-18 96.3 152 38.2
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 2.5e-18 96.3 101 76.2
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 5.5e-18 95.1 111 42.3
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 9.3e-18 94.4 121 43.0
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 4.6e-17 92.0 65 63.1


User provided reference genes

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