Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.2e-160 570.5 831 100.0
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.1e-155 553.9 832 99.3
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 7.3e-84 316.2 833 75.5
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 2.1e-62 245.0 618 82.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.3e-59 235.7 641 79.3
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 6.9e-58 229.9 625 56.2
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 2.3e-53 214.9 192 59.4
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 3.7e-51 207.6 762 63.1
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 2.9e-48 198.0 216 54.2
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 3.2e-47 194.5 191 55.0
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 4.2e-47 194.1 212 51.9
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 5.5e-47 193.7 212 50.9
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 1.6e-46 192.2 205 51.2
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 8.8e-45 186.4 198 50.5
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.0e-44 185.3 189 52.9
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 1.8e-42 178.7 192 51.0
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 1.0e-40 172.9 198 45.5
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 2.9e-40 171.4 226 47.3
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 5.5e-39 167.2 188 45.2
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 1.6e-38 165.6 132 59.8
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 1.6e-38 165.6 214 43.9
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 2.1e-38 165.2 179 50.3
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 6.1e-38 163.7 194 45.9
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.0e-37 162.9 191 46.6
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 1.4e-37 162.5 207 45.4
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 1.4e-37 162.5 147 51.0
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 6.7e-37 160.2 171 48.0
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.1e-36 159.5 145 55.2
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 1.5e-36 159.1 187 47.6
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 4.4e-36 157.5 171 46.2
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 5.7e-36 157.1 175 50.9
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.3e-35 156.0 195 43.6
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 1.7e-35 155.6 145 53.8
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.2e-35 155.2 175 50.9
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.2e-35 155.2 175 49.7
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 2.8e-35 154.8 198 42.4
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 3.7e-35 154.5 149 55.0
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 3.7e-35 154.5 171 46.8
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 6.3e-35 153.7 171 49.7
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.1e-34 152.9 190 44.7
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 7.0e-34 150.2 169 45.6
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.5e-33 149.1 135 55.6
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 2.6e-33 148.3 207 44.4
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 4.5e-33 147.5 212 42.0
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 7.7e-33 146.7 187 40.6
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 7.7e-33 146.7 203 41.9
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 8.5e-32 143.3 142 47.9
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 4.2e-31 141.0 143 52.4
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 5.5e-31 140.6 216 40.7
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 7.2e-31 140.2 171 42.7
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.2e-30 139.4 140 51.4
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.1e-30 138.7 187 41.7
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 2.7e-30 138.3 190 41.1
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 6.1e-30 137.1 193 41.5
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.0e-29 136.3 156 44.9
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 1.4e-29 136.0 158 46.2
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.3e-29 135.2 156 44.9
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.3e-29 135.2 156 44.2
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 3.9e-29 134.4 149 46.3
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 8.8e-29 133.3 207 39.1
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 8.8e-29 133.3 183 39.9
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 1.1e-28 132.9 138 47.1
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 1.3e-27 129.4 199 36.7
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 2.2e-27 128.6 142 47.9
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 2.8e-27 128.3 138 46.4
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 6.3e-27 127.1 132 46.2
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 8.2e-27 126.7 138 45.7
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 2.4e-26 125.2 190 43.2
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 2.4e-26 125.2 163 41.7
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 4.1e-26 124.4 177 38.4
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 5.3e-26 124.0 187 38.5
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 7.0e-26 123.6 161 41.0
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.2e-25 122.9 143 45.5
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 2.0e-25 122.1 138 46.4
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 2.6e-25 121.7 216 34.7
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 2.6e-25 121.7 142 45.1
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 4.5e-25 120.9 88 64.8
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 5.9e-25 120.6 138 46.4
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 5.9e-25 120.6 193 36.3
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 5.9e-25 120.6 154 44.8
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 7.7e-25 120.2 159 43.4
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 1.0e-24 119.8 138 46.4
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.0e-24 119.8 138 46.4
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 1.0e-24 119.8 188 40.4
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 1.7e-24 119.0 147 42.9
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 3.8e-24 117.9 87 65.5
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 3.8e-24 117.9 189 36.5
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 3.8e-24 117.9 141 42.6
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 5.0e-24 117.5 137 46.7
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 6.5e-24 117.1 136 44.1
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.5e-23 115.9 167 40.1
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 1.5e-23 115.9 185 39.5
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 1.9e-23 115.5 189 38.6
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 3.2e-23 114.8 134 45.5
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 4.2e-23 114.4 147 40.8
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 2.1e-22 112.1 168 38.7
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 3.6e-22 111.3 171 35.7
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 3.6e-22 111.3 133 44.4
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 3.6e-22 111.3 113 47.8
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 6.1e-22 110.5 203 35.5
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 1.0e-21 109.8 136 42.6
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 6.7e-21 107.1 189 36.0
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 8.8e-21 106.7 204 34.8
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 7.5e-20 103.6 157 37.6
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 3.7e-19 101.3 191 37.2
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 4.8e-19 100.9 151 39.1
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.8e-18 99.0 150 35.3
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 2.4e-18 98.6 147 37.4
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.6e-17 95.9 88 55.7
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 1.6e-17 95.9 125 40.8
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.2e-16 92.0 151 35.1
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 2.9e-16 91.7 218 33.5
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 8.5e-16 90.1 88 51.1
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.1e-15 89.7 151 34.4
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 1.1e-15 89.7 155 31.0
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 1.5e-15 89.4 132 37.9
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 4.2e-15 87.8 91 47.3
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 5.5e-15 87.4 91 48.4
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 7.2e-15 87.0 147 37.4
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 3.0e-13 81.6 91 46.2
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 4.0e-13 81.3 158 32.3
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 8.8e-13 80.1 132 32.6
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 3.4e-12 78.2 81 49.4
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 3.4e-12 78.2 87 47.1
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 9.8e-12 76.6 124 34.7
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.3e-11 76.3 71 54.9
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 1.7e-11 75.9 141 31.9
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 2.2e-11 75.5 124 33.9
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 4.8e-11 74.3 123 34.1
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 4.8e-11 74.3 123 34.1
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 4.8e-11 74.3 123 34.1
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 6.3e-11 73.9 146 35.6
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 2.0e-09 68.9 86 41.9
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 3.5e-09 68.2 88 39.8
CARHR014470 Cardamine hirsuta HOM05D004824 ORTHO05D017526 7.7e-09 67.0 160 31.2
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 7.7e-09 67.0 59 50.8
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 1.7e-08 65.9 133 32.3
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 2.9e-08 65.1 136 34.6
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 6.6e-08 63.9 91 38.5
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 8.6e-08 63.5 138 30.4
CsaV3_5G017450 Cucumis sativus L. HOM05D007496 ORTHO05D009479 1.1e-07 63.2 136 30.1
Ah.02g120040 Amaranthus hybridus HOM05D007496 ORTHO05D009479 1.5e-07 62.8 133 33.1
Zm00001eb140410 Zea mays HOM05D026208 ORTHO05D030341 1.5e-07 62.8 169 29.0
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 1.5e-07 62.8 164 26.8
SHI14851 Sapria himalayana HOM05D007496 ORTHO05D009479 2.5e-07 62.0 138 34.8
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 2.5e-07 62.0 145 29.0
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 3.3e-07 61.6 131 31.3
MELO3C033967.2 Cucumis melo HOM05D007496 ORTHO05D009479 5.5e-07 60.8 136 29.4
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 5.5e-07 60.8 135 33.3
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 7.2e-07 60.5 114 29.8
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 1.2e-06 59.7 135 28.1
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 1.2e-06 59.7 71 42.3
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 1.6e-06 59.3 136 32.4
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 1.6e-06 59.3 135 29.6
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 3.6e-06 58.2 130 30.8
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 4.7e-06 57.8 133 30.8
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 6.1e-06 57.4 108 33.3
Dinv28147 Davidia involucrata HOM05D007496 ORTHO05D009479 8.0e-06 57.0 152 28.3
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 8.0e-06 57.0 75 45.3
Sc03g0005490 Simmondsia chinensis HOM05D007496 ORTHO05D009479 8.0e-06 57.0 136 32.4
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 8.0e-06 57.0 136 24.3


User provided reference genes

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