Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 1.9e-110 402.5 205 100.0
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 3.6e-93 345.1 205 85.4
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.8e-92 342.8 204 85.3
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 1.2e-91 340.1 205 85.9
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 1.0e-87 327.0 204 82.4
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 8.7e-87 323.9 205 81.0
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 1.1e-86 323.6 203 81.8
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.5e-86 323.2 205 80.0
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 3.3e-86 322.0 206 80.1
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 4.3e-86 321.6 205 78.5
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 9.6e-86 320.5 205 79.5
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 1.3e-85 320.1 205 80.0
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 1.3e-85 320.1 201 82.1
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 2.1e-85 319.3 205 81.5
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.8e-85 318.9 205 80.5
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 2.8e-85 318.9 205 80.5
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 4.8e-85 318.2 204 80.9
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 4.8e-85 318.2 205 79.0
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.1e-84 317.0 205 80.0
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 2.4e-84 315.8 205 79.5
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 3.1e-84 315.5 205 80.5
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 5.3e-84 314.7 205 81.0
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 6.9e-84 314.3 205 78.5
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 9.0e-84 313.9 205 78.0
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 1.2e-83 313.5 206 79.6
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 1.2e-83 313.5 191 83.8
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 1.5e-83 313.2 222 76.1
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 1.5e-83 313.2 205 78.5
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 2.0e-83 312.8 205 75.6
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 2.0e-83 312.8 206 80.1
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 3.4e-83 312.0 205 79.5
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 5.8e-83 311.2 204 79.4
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 7.6e-83 310.8 205 79.0
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 1.3e-82 310.1 205 77.1
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 1.3e-82 310.1 205 79.0
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 1.7e-82 309.7 204 79.4
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 2.2e-82 309.3 201 77.6
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 6.4e-82 307.8 205 77.6
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 6.4e-82 307.8 189 83.6
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 1.1e-81 307.0 187 83.4
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 1.4e-81 306.6 206 77.2
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 4.2e-81 305.1 206 76.7
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 5.4e-81 304.7 206 74.8
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 5.4e-81 304.7 205 76.1
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 9.3e-81 303.9 205 80.0
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 9.3e-81 303.9 199 79.4
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 1.2e-80 303.5 187 82.9
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 2.1e-80 302.8 205 75.6
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 2.7e-80 302.4 191 79.1
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 3.5e-80 302.0 199 76.9
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 3.5e-80 302.0 205 78.0
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 1.0e-79 300.4 204 77.0
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 1.3e-79 300.1 202 74.8
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 1.8e-79 299.7 206 76.7
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 2.3e-79 299.3 191 78.5
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 6.7e-79 297.7 204 75.0
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 6.7e-79 297.7 204 75.0
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 8.7e-79 297.4 199 76.4
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 8.7e-79 297.4 205 77.1
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.5e-78 296.6 205 74.1
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 1.5e-78 296.6 191 79.6
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.3e-78 295.4 205 74.1
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.3e-78 295.4 205 74.1
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.3e-78 295.0 205 74.1
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 9.6e-78 293.9 229 68.6
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 1.3e-77 293.5 205 75.1
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 1.3e-77 293.5 205 73.2
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 1.6e-77 293.1 207 74.9
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 1.6e-77 293.1 205 73.7
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 2.1e-77 292.7 204 72.5
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 4.8e-77 291.6 196 76.0
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 6.2e-77 291.2 205 74.6
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 6.2e-77 291.2 203 76.4
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 8.1e-77 290.8 207 74.9
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 1.1e-76 290.4 205 74.1
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 1.1e-76 290.4 205 74.1
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 1.1e-76 290.4 205 74.1
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 1.4e-76 290.0 205 74.1
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 1.4e-76 290.0 205 73.7
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 1.4e-76 290.0 316 54.7
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 1.8e-76 289.7 206 73.3
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 2.4e-76 289.3 207 73.9
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 5.3e-76 288.1 207 73.4
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 9.0e-76 287.3 198 74.2
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 2.6e-75 285.8 199 74.4
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 3.4e-75 285.4 202 74.8
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 4.5e-75 285.0 197 75.1
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 2.9e-74 282.3 198 74.2
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 2.9e-74 282.3 205 72.7
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.4e-73 280.0 226 67.3
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 3.2e-73 278.9 204 70.1
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 1.3e-71 273.5 188 72.9
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 2.3e-71 272.7 228 66.7
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 1.9e-70 269.6 192 72.9
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 1.4e-68 263.5 165 81.2
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 1.4e-68 263.5 207 67.6
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 9.0e-68 260.8 161 83.9
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 3.8e-66 255.4 241 58.9
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 2.5e-62 242.7 203 63.1
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 3.3e-62 242.3 166 75.9
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 4.5e-59 231.9 157 75.2
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.5e-54 216.9 132 81.1
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 1.1e-52 210.7 116 91.4
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 5.9e-51 204.9 135 78.5
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 8.5e-50 201.1 135 74.8
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 3.6e-48 195.7 106 89.6
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 1.5e-46 190.3 120 79.2
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 2.0e-46 189.9 126 77.8
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 3.7e-45 185.7 116 81.0
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 2.4e-44 183.0 154 62.3
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 1.1e-41 174.1 108 81.5
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 1.0e-34 151.0 186 47.3
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.3e-34 150.6 148 57.4
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 4.2e-33 145.6 180 44.4
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 7.2e-33 144.8 192 49.0
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 2.0e-30 136.7 93 73.1
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 5.9e-27 125.2 138 48.6
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 2.2e-26 123.2 135 51.9
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 1.5e-25 120.6 184 41.3
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 1.5e-22 110.5 231 34.2
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 2.0e-22 110.2 200 42.0
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 1.3e-10 70.9 193 28.5
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 5.6e-09 65.5 71 46.5
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-08 62.0 48 62.5
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 2.3e-07 60.1 35 77.1
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 8.9e-07 58.2 56 58.9
TAR371G0726 Trochodendron aralioides HOM05D000922 ORTHO05D008200 7.5e-06 55.1 33 78.8


User provided reference genes

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