Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 7.8e-112 407.1 205 100.0
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 2.4e-73 279.3 203 69.5
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.1e-71 271.6 204 71.1
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.1e-70 270.4 204 71.1
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.9e-70 269.6 195 74.9
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 2.5e-70 269.2 203 70.9
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 9.6e-70 267.3 203 70.9
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 9.6e-70 267.3 203 72.4
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 1.3e-69 266.9 193 75.1
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 1.3e-69 266.9 203 70.9
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.3e-69 266.9 203 70.9
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.3e-69 266.9 203 70.9
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 2.8e-69 265.8 203 68.0
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 3.7e-69 265.4 204 69.6
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.1e-68 263.8 203 70.4
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.4e-68 263.5 198 70.2
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.3e-68 261.5 181 74.0
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 9.0e-68 260.8 202 69.8
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 9.0e-68 260.8 204 69.1
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.6e-67 259.2 203 67.5
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 4.5e-67 258.5 203 66.5
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.0e-66 257.3 203 69.5
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.0e-66 257.3 203 68.0
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.3e-66 256.9 203 69.0
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.3e-66 256.9 203 68.5
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 2.2e-66 256.1 197 71.6
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 2.9e-66 255.8 179 71.5
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.8e-66 255.4 204 67.2
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 3.8e-66 255.4 206 65.0
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 3.8e-66 255.4 203 68.0
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 3.8e-66 255.4 195 71.3
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 3.8e-66 255.4 204 66.7
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 6.5e-66 254.6 210 66.7
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 8.4e-66 254.2 203 67.0
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 8.4e-66 254.2 204 68.1
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 1.4e-65 253.4 204 64.7
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 1.4e-65 253.4 203 68.0
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 1.9e-65 253.1 203 68.0
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 2.5e-65 252.7 197 69.5
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 3.2e-65 252.3 215 63.3
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 4.2e-65 251.9 201 67.2
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 4.2e-65 251.9 203 66.5
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 4.2e-65 251.9 203 67.0
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 7.1e-65 251.1 203 65.5
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 7.1e-65 251.1 203 64.5
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 9.3e-65 250.8 197 70.6
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.2e-64 250.4 179 73.7
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 1.6e-64 250.0 208 64.4
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 2.7e-64 249.2 195 70.3
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 4.6e-64 248.4 203 64.5
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 6.0e-64 248.1 205 63.9
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 6.0e-64 248.1 180 71.1
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 2.3e-63 246.1 195 69.7
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 2.3e-63 246.1 178 73.0
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 3.9e-63 245.4 197 63.5
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 3.9e-63 245.4 205 67.8
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.1e-63 245.0 172 73.3
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.5e-62 243.4 195 68.7
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 1.9e-62 243.0 203 66.5
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 1.9e-62 243.0 195 67.2
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 3.3e-62 242.3 211 64.5
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 5.7e-62 241.5 206 63.6
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 5.7e-62 241.5 195 68.2
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 9.6e-62 240.7 171 71.9
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 9.6e-62 240.7 195 65.6
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.6e-61 240.0 204 62.3
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 2.8e-61 239.2 197 67.0
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 3.7e-61 238.8 150 82.0
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 6.3e-61 238.0 205 65.4
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 8.2e-61 237.7 210 61.9
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 8.2e-61 237.7 186 66.1
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.1e-60 237.3 196 64.3
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.4e-60 236.9 196 64.3
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 1.8e-60 236.5 197 66.5
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 2.4e-60 236.1 205 65.4
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 2.4e-60 236.1 203 63.1
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 3.1e-60 235.7 171 71.3
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 6.9e-60 234.6 210 61.9
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 1.2e-59 233.8 151 77.5
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 2.0e-59 233.0 207 62.3
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 2.0e-59 233.0 212 60.8
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 3.4e-59 232.3 195 64.1
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 5.9e-59 231.5 211 60.2
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 1.3e-58 230.3 195 62.6
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.7e-58 229.9 182 64.3
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 2.9e-58 229.2 199 66.8
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 5.0e-58 228.4 207 61.4
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 5.0e-58 228.4 203 64.5
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 6.5e-58 228.0 210 61.0
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 6.5e-58 228.0 203 62.1
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 8.5e-58 227.6 195 63.6
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 1.9e-57 226.5 210 61.0
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 1.9e-57 226.5 208 61.5
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 5.5e-57 224.9 206 61.7
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 5.5e-57 224.9 195 64.1
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 2.7e-56 222.6 147 74.1
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 7.9e-56 221.1 206 60.7
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.0e-55 220.7 205 59.5
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.0e-55 220.7 205 59.5
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 1.3e-55 220.3 201 61.2
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 1.8e-55 219.9 209 58.9
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 2.3e-55 219.5 206 59.2
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.1e-54 217.2 203 59.6
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.3e-53 213.8 211 57.8
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 2.2e-53 213.0 188 60.6
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 3.7e-53 212.2 178 61.2
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 6.3e-53 211.5 142 73.2
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 6.9e-52 208.0 147 69.4
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 2.6e-51 206.1 211 56.9
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 3.8e-50 202.2 152 68.4
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.4e-49 200.3 202 55.0
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 3.2e-49 199.1 221 52.9
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.7e-48 196.1 119 79.8
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 6.1e-48 194.9 188 56.9
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 8.8e-47 191.0 176 58.5
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.1e-36 156.0 145 62.1
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.5e-34 148.3 142 57.0
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.2e-33 146.0 190 44.2
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 2.1e-32 143.3 107 61.7
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 5.7e-30 135.2 144 47.2
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 9.7e-30 134.4 79 78.5
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 9.7e-30 134.4 83 78.3
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 7.0e-28 128.3 79 75.9
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.7e-26 123.6 107 51.4
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 3.6e-24 115.9 70 71.4
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 5.2e-23 112.1 120 55.0
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 5.9e-19 98.6 118 53.4
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 3.6e-16 89.4 139 37.4
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.3e-15 86.7 133 37.6
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 5.7e-14 82.0 104 50.0
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 3.6e-08 62.8 123 34.1


User provided reference genes

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