Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 9.4e-54 214.2 199 100.0
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.7e-50 203.4 103 100.0
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.8e-47 192.2 103 91.3
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.8e-47 192.2 103 91.3
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 2.5e-46 189.5 103 92.2
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 2.3e-44 183.0 103 89.3
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 2.3e-44 183.0 102 90.2
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 2.3e-44 183.0 103 89.3
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 5.2e-44 181.8 103 85.4
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 5.2e-44 181.8 199 85.4
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 8.8e-44 181.0 102 88.2
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 8.8e-44 181.0 102 88.2
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 1.5e-43 180.3 103 86.4
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 3.3e-43 179.1 103 84.5
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 3.3e-43 179.1 103 86.4
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 4.4e-43 178.7 102 86.3
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 5.7e-43 178.3 103 85.4
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 7.5e-43 177.9 201 78.1
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 7.5e-43 177.9 102 87.3
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 7.5e-43 177.9 103 86.4
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 9.7e-43 177.6 103 85.4
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 86.4
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 82.5
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 82.5
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 85.4
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 2.2e-42 176.4 103 84.5
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.2e-42 176.4 103 84.5
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.2e-42 176.4 103 84.5
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.2e-42 176.4 103 85.4
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.8e-42 176.0 103 85.4
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.8e-42 176.0 103 85.4
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.7e-42 175.6 103 84.5
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 6.3e-42 174.9 102 85.3
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 6.3e-42 174.9 103 85.4
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 6.3e-42 174.9 103 83.5
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 6.3e-42 174.9 103 83.5
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 6.3e-42 174.9 103 82.5
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 6.3e-42 174.9 104 85.6
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 6.3e-42 174.9 104 85.6
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 6.3e-42 174.9 103 83.5
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 6.3e-42 174.9 103 83.5
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 6.3e-42 174.9 103 84.5
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 8.2e-42 174.5 103 81.6
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.1e-41 174.1 103 82.5
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 1.1e-41 174.1 103 83.5
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 1.1e-41 174.1 102 84.3
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 1.1e-41 174.1 103 83.5
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 1.1e-41 174.1 103 83.5
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 1.8e-41 173.3 102 83.3
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 1.8e-41 173.3 103 83.5
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.8e-41 173.3 102 82.4
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.8e-41 173.3 105 85.7
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 2.4e-41 172.9 102 84.3
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.4e-41 172.9 103 82.5
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 3.1e-41 172.6 199 75.4
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 4.1e-41 172.2 103 82.5
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 4.1e-41 172.2 104 82.7
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 4.1e-41 172.2 104 82.7
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 5.3e-41 171.8 105 82.9
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 5.3e-41 171.8 103 81.6
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 7.0e-41 171.4 103 81.6
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 7.0e-41 171.4 103 82.5
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 7.0e-41 171.4 102 84.3
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 7.0e-41 171.4 103 81.6
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 7.0e-41 171.4 103 80.6
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 7.0e-41 171.4 103 80.6
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 9.1e-41 171.0 102 81.4
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 1.2e-40 170.6 103 79.6
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 1.2e-40 170.6 103 82.5
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 1.2e-40 170.6 110 80.9
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 1.2e-40 170.6 103 79.6
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.2e-40 170.6 103 81.6
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.6e-40 170.2 103 80.6
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.0e-40 169.9 103 81.6
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 2.0e-40 169.9 103 83.5
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 2.7e-40 169.5 104 84.6
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 2.7e-40 169.5 104 84.6
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 2.7e-40 169.5 102 79.4
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 2.7e-40 169.5 102 80.4
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 3.5e-40 169.1 164 58.5
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 4.5e-40 168.7 102 83.3
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 5.9e-40 168.3 102 81.4
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 7.7e-40 167.9 102 79.4
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 7.7e-40 167.9 102 79.4
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 7.7e-40 167.9 103 78.6
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 7.7e-40 167.9 103 78.6
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.3e-39 167.2 103 78.6
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 2.2e-39 166.4 126 71.4
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.9e-39 166.0 103 76.7
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 6.5e-39 164.9 103 75.7
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 8.5e-39 164.5 103 75.7
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 8.5e-39 164.5 103 75.7
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 8.5e-39 164.5 105 80.0
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 8.5e-39 164.5 103 75.7
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 8.5e-39 164.5 101 79.2
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 1.9e-38 163.3 103 75.7
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 3.2e-38 162.5 103 74.8
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 3.2e-38 162.5 103 74.8
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 3.2e-38 162.5 103 74.8
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 3.2e-38 162.5 103 74.8
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 4.2e-38 162.2 103 75.7
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 7.2e-38 161.4 102 75.5
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 7.2e-38 161.4 101 77.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 7.2e-38 161.4 101 77.2
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 9.4e-38 161.0 103 75.7
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 1.6e-37 160.2 105 75.2
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 1.6e-37 160.2 105 75.2
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 1.6e-37 160.2 105 75.2
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 1.6e-37 160.2 105 75.2
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 6.1e-37 158.3 128 68.8
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 8.0e-37 157.9 105 74.3
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 8.0e-37 157.9 105 74.3
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.0e-36 157.5 191 49.7
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 1.0e-36 157.5 105 76.2
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.0e-35 153.3 94 77.7
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 5.7e-35 151.8 105 70.5
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 5.7e-35 151.8 105 70.5
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 4.8e-34 148.7 103 71.8
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 9.1e-33 144.4 225 42.2
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 1.6e-32 143.7 106 67.9
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 2.0e-32 143.3 104 66.3
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 7.7e-32 141.4 181 48.1
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 5.0e-31 138.7 103 68.0
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 7.2e-30 134.8 74 89.2
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.2e-29 134.0 75 86.7
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 3.6e-29 132.5 74 87.8
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 8.0e-29 131.3 74 87.8
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.0e-28 129.4 71 87.3
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 3.7e-26 122.5 74 77.0
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 4.9e-26 122.1 117 60.7
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 8.3e-26 121.3 84 70.2
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 2.9e-23 112.8 73 72.6
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 3.8e-23 112.5 66 80.3
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 8.6e-23 111.3 65 84.6
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 8.6e-23 111.3 65 84.6
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 3.0e-20 102.8 73 71.2
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 4.4e-19 99.0 69 68.1
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.1e-17 94.4 82 62.2
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 1.2e-16 90.9 132 48.5
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 2.0e-16 90.1 102 51.0
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 4.6e-16 89.0 58 72.4
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 1.0e-15 87.8 82 57.3
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 2.3e-15 86.7 104 54.8
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 5.0e-15 85.5 74 59.5
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 5.0e-15 85.5 74 59.5
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 5.0e-15 85.5 74 59.5
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 3.6e-13 79.3 115 44.3
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 6.8e-12 75.1 34 100.0
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.7e-10 70.5 85 50.6
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 1.7e-10 70.5 43 86.0
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 4.1e-09 65.9 40 80.0
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 4.1e-09 65.9 40 80.0
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.2e-08 64.3 42 73.8
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 1.0e-07 61.2 37 78.4
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 3.0e-07 59.7 40 75.0
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 5.0e-07 58.9 136 57.4
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 3.3e-06 56.2 34 79.4
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 4.3e-06 55.8 41 65.9


User provided reference genes

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