Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 9.7e-192 673.3 343 100.0
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.9e-147 526.2 343 77.6
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 8.7e-140 500.7 343 74.9
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.9e-135 485.7 343 74.1
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 8.7e-132 474.2 343 70.3
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.8e-130 469.2 343 70.0
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.6e-122 443.4 344 66.0
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 6.9e-121 438.0 344 64.0
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.5e-120 436.8 344 64.5
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.1e-118 430.6 344 63.1
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.0e-116 424.1 343 64.4
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 3.9e-116 422.2 344 64.8
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.5e-115 420.2 342 63.7
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.5e-115 420.2 343 64.4
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 2.5e-115 419.5 346 63.6
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 6.2e-114 414.8 344 63.7
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 9.0e-113 411.0 345 62.9
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.2e-112 410.6 343 62.1
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.2e-112 410.6 343 63.6
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 5.8e-112 408.3 344 60.2
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.9e-110 403.3 343 60.9
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 2.5e-110 402.9 344 62.5
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 4.2e-110 402.1 345 59.7
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.6e-109 400.2 344 60.5
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 3.5e-109 399.1 344 60.5
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 2.3e-108 396.4 355 59.4
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 3.9e-108 395.6 326 62.6
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 5.1e-108 395.2 336 58.9
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.1e-107 394.0 322 63.4
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.5e-107 393.7 344 58.1
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.5e-107 393.7 344 58.4
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.5e-107 393.7 344 58.4
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.9e-107 393.3 346 63.3
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.9e-107 393.3 354 60.5
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 5.7e-107 391.7 344 60.5
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 7.4e-107 391.3 344 59.3
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.3e-106 390.6 343 57.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.2e-106 389.8 323 65.3
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.8e-105 386.7 309 66.3
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 9.0e-105 384.4 343 58.0
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 5.9e-104 381.7 344 56.1
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 5.0e-103 378.6 344 56.1
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 9.4e-102 374.4 344 55.5
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 2.1e-101 373.2 345 57.1
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 7.9e-101 371.3 346 59.0
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.4e-100 370.5 346 54.0
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.0e-100 369.4 344 59.3
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.5e-99 367.1 344 59.3
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 4.3e-99 365.5 347 56.5
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 7.4e-99 364.8 343 55.4
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 9.7e-99 364.4 344 57.3
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.2e-98 363.2 347 52.2
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.8e-98 362.8 345 53.6
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 2.8e-98 362.8 343 54.8
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 4.8e-98 362.1 345 58.6
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 8.2e-98 361.3 346 55.8
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.1e-97 360.9 289 66.4
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.1e-97 360.9 328 57.0
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.4e-97 360.5 347 56.5
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.8e-97 360.1 344 55.8
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 2.4e-97 359.8 347 56.5
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 4.1e-97 359.0 347 52.4
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 4.1e-97 359.0 346 52.3
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 5.3e-97 358.6 346 52.0
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 9.1e-97 357.8 335 58.2
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.0e-96 356.7 338 53.3
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 2.6e-96 356.3 346 53.2
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 4.5e-96 355.5 343 55.4
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.0e-95 354.4 346 52.0
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.3e-95 354.0 343 54.5
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.3e-95 354.0 343 54.5
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.2e-95 353.2 343 54.5
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 8.5e-95 351.3 338 52.1
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 5.5e-94 348.6 344 52.9
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.6e-93 347.1 344 55.2
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.4e-92 344.0 337 51.6
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.3e-92 343.2 343 52.2
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 6.7e-92 341.7 344 54.1
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 2.0e-91 340.1 344 54.7
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.6e-91 339.7 343 50.4
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 4.4e-91 339.0 343 52.5
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 9.7e-91 337.8 338 55.0
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 9.7e-91 337.8 344 52.6
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.7e-90 337.0 344 52.3
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 3.7e-90 335.9 344 52.3
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 6.3e-90 335.1 343 51.9
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.2e-88 330.9 343 51.3
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 1.2e-88 330.9 344 52.6
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 4.5e-88 328.9 343 50.7
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 7.7e-88 328.2 343 51.3
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 7.7e-88 328.2 343 52.8
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 2.2e-87 326.6 346 52.6
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.9e-87 326.2 343 50.7
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 6.5e-87 325.1 343 48.7
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 8.5e-87 324.7 349 54.4
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.1e-86 324.3 343 49.6
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.4e-86 323.9 307 56.0
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 5.5e-86 322.0 334 50.3
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 5.5e-86 322.0 343 49.6
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 2.1e-85 320.1 304 54.9
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 4.7e-85 318.9 319 56.4
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.8e-84 317.0 351 49.6
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 3.0e-84 316.2 346 48.0
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 5.2e-84 315.5 344 50.3
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.7e-84 315.1 319 56.1
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.1e-83 314.3 307 55.0
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.1e-83 314.3 347 48.1
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.0e-83 313.5 309 55.7
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 7.4e-83 311.6 347 48.4
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.3e-82 310.8 347 49.6
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 2.2e-82 310.1 292 53.8
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.8e-82 309.7 343 48.7
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 4.8e-82 308.9 344 50.0
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-81 307.8 346 47.4
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.3e-81 305.4 340 50.9
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.6e-80 303.1 347 47.6
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 3.5e-80 302.8 291 55.7
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.3e-79 300.8 344 50.9
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 2.9e-79 299.7 340 47.6
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.1e-78 297.7 344 49.7
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 3.2e-78 296.2 344 49.1
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.6e-77 293.9 345 49.3
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 5.2e-76 288.9 334 50.3
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 5.7e-75 285.4 347 45.8
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.8e-73 280.4 345 46.7
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.0e-71 274.6 346 45.7
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.9e-71 273.1 346 45.7
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 4.2e-70 269.2 300 48.3
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 2.4e-65 253.4 331 41.7
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 6.6e-63 245.4 335 43.9
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 9.5e-62 241.5 307 44.0
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 9.2e-57 224.9 334 41.9
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.0e-56 223.8 199 57.8
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.0e-55 219.2 343 39.9
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 8.6e-55 218.4 332 40.7
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 2.5e-54 216.9 282 42.6
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.8e-52 208.8 137 71.5
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 3.4e-51 206.5 342 38.6
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.4e-49 200.3 239 44.4
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.7e-47 194.1 137 67.9
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.9e-47 193.0 129 69.8
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 7.3e-46 188.7 209 45.0
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 3.5e-40 169.9 293 38.9
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 5.4e-33 146.0 335 34.0
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 1.0e-31 141.7 103 62.1
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 5.1e-23 112.8 133 48.9
Actinidia19336 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.8e-13 80.5 71 56.3
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 4.9e-10 69.7 146 32.2
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 6.0e-08 62.8 39 76.9
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 3.3e-06 57.0 163 27.6
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 4.3e-06 56.6 207 25.6


User provided reference genes

Program Settings