Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000179 Camellia sinensis var. sinensis HOM05D007049 ORTHO05D008896 4.5e-74 281.2 144 100.0
Hma1.2p1_0400F.1_g144580 Hydrangea macrophylla HOM05D007049 ORTHO05D008896 7.8e-34 147.5 98 79.6
Oeu023195.1 Olea europaea HOM05D007049 ORTHO05D008896 3.9e-33 145.2 97 77.3
FAN18G1167 Fragaria x ananassa HOM05D007049 ORTHO05D008896 6.6e-33 144.4 94 76.6
FAN18G2563 Fragaria x ananassa HOM05D007049 ORTHO05D008896 6.6e-33 144.4 94 76.6
MD10G1006000 Malus domestica HOM05D007049 ORTHO05D008896 7.3e-32 141.0 92 77.2
QL04p010524 Quercus lobata HOM05D007049 ORTHO05D008896 7.3e-32 141.0 93 75.3
Rhsim08G0116100 Rhododendron simsii HOM05D007049 ORTHO05D008896 1.2e-31 140.2 87 80.5
Nn5g27287 Nelumbo nucifera HOM05D007049 ORTHO05D008896 1.6e-31 139.8 96 72.9
TWI12G1157 Tripterygium wilfordii HOM05D007049 ORTHO05D008896 2.8e-31 139.0 96 71.9
CAN.G4100.1 Capsicum annuum HOM05D007049 ORTHO05D008896 4.7e-31 138.3 97 72.2
Prupe.8G009200 Prunus persica HOM05D007049 ORTHO05D008896 4.7e-31 138.3 95 76.8
TAR624G0348 Trochodendron aralioides HOM05D007049 ORTHO05D008896 6.2e-31 137.9 95 73.7
Peaxi162Scf00078g00061 Petunia axillaris HOM05D007049 ORTHO05D008896 1.1e-30 137.1 97 73.2
RcHm_v2.0_Chr7g0212661 Rosa chinensis HOM05D007049 ORTHO05D008896 1.1e-30 137.1 96 72.9
Solyc09g007070.1 Solanum lycopersicum HOM05D007049 ORTHO05D008896 1.1e-30 137.1 97 72.2
Sopen09g001930 Solanum pennellii HOM05D007049 ORTHO05D008896 1.1e-30 137.1 97 72.2
COL.COLO4_06913 Corchorus olitorius HOM05D007049 ORTHO05D008896 1.4e-30 136.7 96 71.9
CiPaw.15G066500 Carya illinoinensis HOM05D007049 ORTHO05D008896 1.8e-30 136.3 94 72.3
PGSC0003DMG401002024 Solanum tuberosum HOM05D007049 ORTHO05D008896 1.8e-30 136.3 97 71.1
Sabra01G0012500 Salix brachista HOM05D007049 ORTHO05D008896 2.4e-30 136.0 104 69.2
Migut.C01376 Erythranthe guttata HOM05D007049 ORTHO05D008896 3.1e-30 135.6 98 72.4
CAN.G608.33 Capsicum annuum HOM05D007049 ORTHO05D008896 6.8e-30 134.4 92 73.9
SalBow7G2968 Salvia bowleyana HOM05D007049 ORTHO05D008896 8.9e-30 134.0 122 61.5
Thecc.08G177900 Theobroma cacao HOM05D007049 ORTHO05D008896 1.2e-29 133.7 96 70.8
Nitab4.5_0000213g0160 Nicotiana tabacum HOM05D007049 ORTHO05D008896 1.5e-29 133.3 97 71.1
TAR624G1340 Trochodendron aralioides HOM05D007049 ORTHO05D008896 1.5e-29 133.3 88 75.0
Duzib177G1207 Durio zibethinus HOM05D007049 ORTHO05D008896 2.0e-29 132.9 90 74.4
Prupe.8G008400 Prunus persica HOM05D007049 ORTHO05D008896 2.0e-29 132.9 92 76.1
Eucgr.F02581 Eucalyptus grandis HOM05D007049 ORTHO05D008896 2.6e-29 132.5 88 72.7
FAN08G2573 Fragaria x ananassa HOM05D007049 ORTHO05D008896 2.6e-29 132.5 87 74.7
Gohir.D13G119000 Gossypium hirsutum HOM05D007049 ORTHO05D008896 2.6e-29 132.5 92 71.7
Gorai.013G133400 Gossypium raimondii HOM05D007049 ORTHO05D008896 2.6e-29 132.5 92 71.7
Gohir.A13G115800 Gossypium hirsutum HOM05D007049 ORTHO05D008896 3.4e-29 132.1 92 71.7
Cc10_g08690 Coffea canephora HOM05D007049 ORTHO05D008896 4.4e-29 131.7 93 69.9
MBI13_g15314_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 4.4e-29 131.7 86 77.9
MBI13_g30327_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 4.4e-29 131.7 86 77.9
Nitab4.5_0000398g0030 Nicotiana tabacum HOM05D007049 ORTHO05D008896 4.4e-29 131.7 97 70.1
RcHm_v2.0_Chr7g0212551 Rosa chinensis HOM05D007049 ORTHO05D008896 5.8e-29 131.3 96 72.9
Ah.05g168610 Amaranthus hybridus HOM05D007049 ORTHO05D008896 1.7e-28 129.8 94 68.1
Cfa019294 Carpinus fangiana HOM05D007049 ORTHO05D008896 1.7e-28 129.8 94 73.4
RcHm_v2.0_Chr7g0212501 Rosa chinensis HOM05D007049 ORTHO05D008896 1.7e-28 129.8 96 70.8
EL10Ac7g16149 Beta vulgaris HOM05D007049 ORTHO05D008896 4.9e-28 128.3 89 69.7
Sc20g0003280 Simmondsia chinensis HOM05D007049 ORTHO05D008896 4.9e-28 128.3 80 76.2
Cpa.g.sc19.285 Carica papaya HOM05D007049 ORTHO05D008896 6.4e-28 127.9 89 75.3
Sed0002937 Sechium edule HOM05D007049 ORTHO05D008896 6.4e-28 127.9 94 71.3
CANSAT25G3584 Cannabis sativa HOM05D007049 ORTHO05D008896 1.1e-27 127.1 89 74.2
PGR042G0623 Punica granatum HOM05D007049 ORTHO05D008896 1.1e-27 127.1 91 69.2
Sabra01G0012700 Salix brachista HOM05D007049 ORTHO05D008896 1.1e-27 127.1 83 75.9
AUR62022356 Chenopodium quinoa HOM05D007049 ORTHO05D008896 1.4e-27 126.7 97 63.9
AUR62034352 Chenopodium quinoa HOM05D007049 ORTHO05D008896 1.4e-27 126.7 97 63.9
Lalb_Chr03g0041921 Lupinus albus HOM05D007049 ORTHO05D008896 1.9e-27 126.3 86 73.3
arahy.Tifrunner.gnm1.ann1.6H88WF Arachis hypogaea HOM05D007049 ORTHO05D008896 3.2e-27 125.6 90 67.8
FAN04G0010 Fragaria x ananassa HOM05D007049 ORTHO05D008896 5.4e-27 124.8 78 79.5
Ciclev10023082m.g Citrus clementina HOM05D007049 ORTHO05D008896 1.2e-26 123.6 98 70.4
VMungo1215G2220 Vigna mungo HOM05D007049 ORTHO05D008896 1.2e-26 123.6 93 65.6
Ca_24471_v3 Cicer arietinum L. HOM05D007049 ORTHO05D008896 1.6e-26 123.2 91 67.0
Psat7g180160 Pisum sativum HOM05D007049 ORTHO05D008896 2.7e-26 122.5 92 69.6
RcHm_v2.0_Chr6g0251481 Rosa chinensis HOM05D007049 ORTHO05D008896 2.7e-26 122.5 92 66.3
Phvul.002G036400 Phaseolus vulgaris HOM05D007049 ORTHO05D008896 3.5e-26 122.1 96 63.5
DCAR_006853 Daucus carota HOM05D007049 ORTHO05D008896 4.6e-26 121.7 97 66.0
Os08g0278600 Oryza sativa ssp. japonica HOM05D007049 ORTHO05D008896 4.6e-26 121.7 81 71.6
TPR.G37942 Trifolium pratense HOM05D007049 ORTHO05D008896 4.6e-26 121.7 90 67.8
DCAR_017595 Daucus carota HOM05D007049 ORTHO05D008896 7.8e-26 120.9 97 64.9
Glyma.11G013800 Glycine max HOM05D007049 ORTHO05D008896 7.8e-26 120.9 91 65.9
Psat2g187280 Pisum sativum HOM05D007049 ORTHO05D008896 1.0e-25 120.6 93 69.9
LjContig00222g0016429 Lotus japonicus HOM05D007049 ORTHO05D008896 1.3e-25 120.2 88 68.2
arahy.Tifrunner.gnm1.ann1.CT79FY Arachis hypogaea HOM05D007049 ORTHO05D008896 3.0e-25 119.0 85 68.2
Psat7g180120 Pisum sativum HOM05D007049 ORTHO05D008896 3.0e-25 119.0 92 67.4
THA.LOC104824284 Tarenaya hassleriana HOM05D007049 ORTHO05D008896 3.0e-25 119.0 93 65.6
ClCG08G001090 Citrullus lanatus HOM05D007049 ORTHO05D008896 3.9e-25 118.6 82 72.0
unitig_46.g17984 Utricularia gibba HOM05D007049 ORTHO05D008896 3.9e-25 118.6 97 63.9
Aa31LG5G19930 Aethionema arabicum HOM05D007049 ORTHO05D008896 6.6e-25 117.9 89 67.4
Psat7g180080 Pisum sativum HOM05D007049 ORTHO05D008896 6.6e-25 117.9 97 63.9
MELO3C022175.2 Cucumis melo HOM05D007049 ORTHO05D008896 8.7e-25 117.5 80 73.8
ECA248G1776 Erigeron canadensis HOM05D007049 ORTHO05D008896 8.7e-25 117.5 94 63.8
CARHR134570 Cardamine hirsuta HOM05D007049 ORTHO05D008896 1.1e-24 117.1 89 68.5
Carub.0004s2178 Capsella rubella HOM05D007049 ORTHO05D008896 1.9e-24 116.3 89 68.5
HanXRQChr10g0289041 Helianthus annuus HOM05D007049 ORTHO05D008896 1.9e-24 116.3 97 60.8
CsaV3_5G039970 Cucumis sativus L. HOM05D007049 ORTHO05D008896 2.5e-24 115.9 80 72.5
Medtr5g008340 Medicago truncatula HOM05D007049 ORTHO05D008896 4.3e-24 115.2 90 64.4
HanXRQChr04g0114811 Helianthus annuus HOM05D007049 ORTHO05D008896 7.3e-24 114.4 97 58.8
AL4G37190 Arabidopsis lyrata HOM05D007049 ORTHO05D008896 9.6e-24 114.0 89 66.3
Thhalv10017481m.g Eutrema salsugineum HOM05D007049 ORTHO05D008896 2.1e-23 112.8 89 64.0
BcaC02g07431 Brassica carinata HOM05D007049 ORTHO05D008896 2.8e-23 112.5 84 66.7
C04p67530 Brassica napus HOM05D007049 ORTHO05D008896 2.8e-23 112.5 84 66.7
Psat7g195680 Pisum sativum HOM05D007049 ORTHO05D008896 3.6e-23 112.1 92 66.3
Zm00001eb026180 Zea mays HOM05D007049 ORTHO05D008896 8.1e-23 110.9 88 63.6
PSO017G7166 Papaver somniferum HOM05D007049 ORTHO05D008896 1.1e-22 110.5 75 73.3
AT2G39725 Arabidopsis thaliana HOM05D007049 ORTHO05D008896 1.4e-22 110.2 89 65.2
Prupe.8G008800 Prunus persica HOM05D007049 ORTHO05D008896 1.8e-22 109.8 79 73.4
A04p30310 Brassica napus HOM05D007049 ORTHO05D008896 3.1e-22 109.0 85 67.1
BcaB06g29104 Brassica carinata HOM05D007049 ORTHO05D008896 4.0e-22 108.6 85 65.9
BolC4t28250H Brassica oleracea HOM05D007049 ORTHO05D008896 4.0e-22 108.6 85 65.9
ATR0057G071 Amborella trichopoda HOM05D007049 ORTHO05D008896 6.9e-22 107.8 86 59.3
Aqoxy3G02546 Aquilegia oxysepala HOM05D007049 ORTHO05D008896 6.9e-22 107.8 77 66.2
HPP92_017350 Vanilla planifolia HOM05D007049 ORTHO05D008896 6.9e-22 107.8 119 52.1
BraA04t18476Z Brassica rapa HOM05D007049 ORTHO05D008896 9.0e-22 107.5 85 64.7
Sp4g21990 Schrenkiella parvula HOM05D007049 ORTHO05D008896 2.0e-21 106.3 84 64.3
SGA_v2.0_scaffold118G32610 Striga asiatica HOM05D007049 ORTHO05D008896 7.6e-21 104.4 76 67.1
FAN13G1882 Fragaria x ananassa HOM05D007049 ORTHO05D008896 9.9e-21 104.0 68 76.5
Prupe.8G009100 Prunus persica HOM05D007049 ORTHO05D008896 4.9e-20 101.7 86 65.1
Manes.01G011600 Manihot esculenta HOM05D007049 ORTHO05D008896 6.4e-20 101.3 70 77.1
Potri.001G018100 Populus trichocarpa HOM05D007049 ORTHO05D008896 8.4e-20 100.9 63 81.0
SMO353G0203 Selaginella moellendorffii HOM05D007049 ORTHO05D008896 1.0e-17 94.0 76 59.2
SHI21473 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-16 90.1 63 69.8
Pp3c4_6780 Physcomitrium patens HOM05D007049 ORTHO05D008896 2.5e-16 89.4 79 60.8
MD05G1008200 Malus domestica HOM05D007049 ORTHO05D008896 2.1e-15 86.3 66 66.7
Mapoly0004s0187 Marchantia polymorpha HOM05D007049 ORTHO05D008896 6.2e-15 84.7 72 58.3
MCO05G024 Micromonas commoda HOM05D007049 ORTHO05D008896 3.3e-08 62.4 83 39.8
Lsat_1_v5_gn_1_45401 Lactuca sativa HOM05D007049 ORTHO05D008896 5.3e-06 55.1 41 63.4


User provided reference genes

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