Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 2.5e-259 898.3 452 100.0
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 1.5e-245 852.4 436 98.6
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.3e-207 726.5 433 84.1
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 3.4e-200 701.8 433 82.0
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 3.6e-194 681.8 453 77.0
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 2.7e-173 612.5 434 70.3
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 5.1e-172 608.2 437 70.0
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 9.3e-166 587.4 465 65.6
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 3.5e-165 585.5 432 67.6
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 1.1e-163 580.5 433 67.4
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 1.2e-160 570.5 476 65.3
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 3.8e-159 565.5 422 68.2
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 4.9e-159 565.1 445 64.0
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 1.1e-158 563.9 431 65.7
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 3.2e-158 562.4 418 67.9
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 1.6e-157 560.1 434 65.7
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 4.6e-157 558.5 444 65.8
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 7.9e-157 557.8 431 65.7
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 1.0e-156 557.4 450 65.8
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 1.8e-156 556.6 433 65.1
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 3.0e-156 555.8 430 64.0
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 1.1e-155 553.9 434 65.0
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 5.6e-155 551.6 431 65.2
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 3.7e-154 548.9 427 65.6
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 3.1e-153 545.8 433 64.0
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 9.0e-153 544.3 436 63.1
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 4.9e-151 538.5 434 64.1
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 7.1e-150 534.6 433 64.0
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 9.3e-150 534.3 430 63.5
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 1.2e-149 533.9 426 64.1
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 1.2e-149 533.9 434 63.6
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 1.5e-147 526.9 434 62.7
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 4.8e-146 521.9 430 63.5
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 6.2e-146 521.5 422 63.0
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 1.1e-145 520.8 430 63.3
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 2.4e-145 519.6 431 64.0
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.4e-145 519.6 433 62.1
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.4e-145 519.6 433 62.1
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 9.0e-145 517.7 433 61.9
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 9.0e-145 517.7 433 61.4
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 1.0e-143 514.2 435 62.1
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 2.2e-143 513.1 441 61.7
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 8.4e-143 511.1 433 60.5
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 2.5e-142 509.6 433 61.2
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 9.3e-142 507.7 426 60.6
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 2.7e-141 506.1 433 60.7
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 2.7e-141 506.1 500 55.4
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 3.5e-141 505.8 434 61.1
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 3.5e-141 505.8 433 60.3
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 1.8e-140 503.4 430 60.5
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 3.9e-140 502.3 435 58.4
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 6.7e-140 501.5 433 60.3
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 1.1e-139 500.7 434 60.6
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 1.1e-139 500.7 444 58.3
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 1.5e-139 500.4 310 78.7
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 3.3e-139 499.2 444 60.6
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 2.2e-138 496.5 430 58.6
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 2.8e-138 496.1 430 60.7
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 1.9e-134 483.4 433 59.4
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 3.2e-134 482.6 404 61.4
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 5.5e-134 481.9 441 57.8
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 2.7e-133 479.6 433 59.4
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 6.1e-133 478.4 434 58.1
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 1.8e-132 476.9 423 60.0
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 8.8e-132 474.6 432 55.1
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 2.2e-130 469.9 428 58.2
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 2.8e-130 469.5 428 59.8
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 8.2e-130 468.0 466 54.5
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 8.2e-130 468.0 428 56.1
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 1.8e-129 466.8 428 54.0
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 2.4e-129 466.5 422 57.3
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 1.5e-128 463.8 429 55.0
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 1.3e-127 460.7 425 54.8
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 2.9e-127 459.5 420 60.7
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 3.8e-127 459.1 428 54.2
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 8.5e-127 458.0 429 54.5
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 8.5e-127 458.0 425 53.4
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 8.5e-127 458.0 425 53.6
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 2.5e-126 456.4 426 56.3
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 9.4e-126 454.5 434 56.7
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 1.2e-125 454.1 428 54.2
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 4.7e-125 452.2 373 59.2
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 7.9e-125 451.4 447 56.2
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 6.7e-124 448.4 423 54.6
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 5.7e-123 445.3 423 53.9
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 5.7e-123 445.3 427 57.4
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 2.8e-122 443.0 435 52.2
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 8.2e-122 441.4 431 56.1
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 1.8e-121 440.3 415 54.5
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 1.2e-120 437.6 417 54.0
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 2.9e-119 433.0 377 59.9
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 8.5e-119 431.4 290 71.0
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 3.7e-114 416.0 442 53.4
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 1.8e-113 413.7 417 53.7
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 4.0e-108 396.0 441 49.2
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 2.5e-102 376.7 437 49.7
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 5.5e-102 375.6 458 46.9
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 5.5e-94 349.0 322 57.8
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 3.0e-92 343.2 345 53.0
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 1.5e-91 340.9 423 44.9
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 2.9e-87 326.6 434 43.5
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 9.9e-67 258.5 145 88.3
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 4.6e-64 249.6 293 48.8
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 2.8e-61 240.4 395 40.5
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 2.4e-60 237.3 147 77.6
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 2.2e-58 230.7 259 47.5
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 1.9e-57 227.6 141 75.9
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 9.2e-57 225.3 368 36.7
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 3.5e-56 223.4 361 36.3
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 6.2e-53 212.6 223 52.9
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 7.6e-51 205.7 455 34.3
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 2.2e-50 204.1 302 37.1
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 1.1e-49 201.8 294 37.8
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 8.1e-45 185.7 141 59.6
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.8e-44 184.5 160 63.1
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 3.2e-41 173.7 141 63.1
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 3.8e-34 150.2 159 47.8
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 4.9e-34 149.8 294 31.6
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 2.6e-19 100.9 284 22.9
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 9.4e-17 92.4 61 68.9
Cre01.g048600 Chlamydomonas reinhardtii HOM05D006228 ORTHO05D007847 2.7e-16 90.9 186 28.0
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 6.1e-16 89.7 61 67.2
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 2.5e-14 84.3 106 42.5
Nitab4.5_0001379g0140 Nicotiana tabacum HOM05D006228 ORTHO05D007847 2.6e-06 57.8 29 82.8


User provided reference genes

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