Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000173 Camellia sinensis var. sinensis HOM05D023575 ORTHO05D109196 3.8e-34 147.5 70 100.0
CSS0019443 Camellia sinensis var. sinensis HOM05D023575 ORTHO05D109426 1.6e-24 115.5 67 82.1
CSS0041195 Camellia sinensis var. sinensis HOM05D023575 ORTHO05D112383 1.6e-24 115.5 67 82.1
CSS0024334 Camellia sinensis var. sinensis HOM05D023575 ORTHO05D110983 7.9e-24 113.2 67 80.6
CSS0040960 Camellia sinensis var. sinensis HOM05D023575 ORTHO05D112135 7.9e-24 113.2 67 80.6
CSS0025970 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 2.4e-12 75.1 37 97.3
QL10p005473 Quercus lobata HOM05D000230 ORTHO05D000176 4.5e-11 70.9 37 89.2
TAR622G1283 Trochodendron aralioides HOM05D000230 ORTHO05D000176 5.9e-11 70.5 37 89.2
TWI09G0250 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 7.7e-11 70.1 37 86.5
Manes.06G114500 Manihot esculenta HOM05D000230 ORTHO05D000176 1.0e-10 69.7 37 86.5
TWI39G0021 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 3.8e-10 67.8 37 83.8
SGA_v2.0_scaffold102G29867 Striga asiatica HOM05D000230 ORTHO05D000176 5.0e-10 67.4 37 86.5
Actinidia16195 Actinidia chinensis HOM05D000230 ORTHO05D000176 6.5e-10 67.0 37 86.5
Migut.I00262 Erythranthe guttata HOM05D000230 ORTHO05D000176 6.5e-10 67.0 37 86.5
TAR374G1342 Trochodendron aralioides HOM05D000230 ORTHO05D000176 6.5e-10 67.0 37 83.8
DCAR_016419 Daucus carota HOM05D000230 ORTHO05D000176 1.1e-09 66.2 37 83.8
Nn4g22481 Nelumbo nucifera HOM05D000230 ORTHO05D000176 1.1e-09 66.2 37 83.8
Aqoxy3G01312 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 1.5e-09 65.9 37 81.1
MD06G1158200 Malus domestica HOM05D000230 ORTHO05D000176 1.9e-09 65.5 37 78.4
SalBow7G0261 Salvia bowleyana HOM05D000230 ORTHO05D000176 1.9e-09 65.5 37 83.8
Ciclev10018456m.g Citrus clementina HOM05D000230 ORTHO05D000176 2.5e-09 65.1 37 81.1
MD14G1164800 Malus domestica HOM05D000230 ORTHO05D000176 2.5e-09 65.1 37 78.4
Atru.chr9.999 Acer truncatum HOM05D000230 ORTHO05D000176 3.2e-09 64.7 37 81.1
FvH4_5g07240 Fragaria vesca HOM05D000230 ORTHO05D000176 3.2e-09 64.7 37 75.7
FAN04G3118 Fragaria x ananassa HOM05D000230 ORTHO05D000176 3.2e-09 64.7 37 75.7
FAN13G0007 Fragaria x ananassa HOM05D000230 ORTHO05D000176 3.2e-09 64.7 37 75.7
FAN18G1505 Fragaria x ananassa HOM05D000230 ORTHO05D000176 3.2e-09 64.7 37 75.7
Prupe.5G158100 Prunus persica HOM05D000230 ORTHO05D000176 4.2e-09 64.3 37 78.4
ClCG06G017700 Citrullus lanatus HOM05D000230 ORTHO05D000176 5.5e-09 63.9 36 80.6
MELO3C026219.2 Cucumis melo HOM05D000230 ORTHO05D000176 5.5e-09 63.9 36 80.6
CsaV3_1G000760 Cucumis sativus L. HOM05D000230 ORTHO05D000176 5.5e-09 63.9 36 80.6
Dinv11114 Davidia involucrata HOM05D000230 ORTHO05D000176 5.5e-09 63.9 36 83.3
Potri.015G089300 Populus trichocarpa HOM05D000230 ORTHO05D000176 5.5e-09 63.9 37 81.1
vmacro19252 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 7.2e-09 63.5 37 81.1
FAN08G3494 Fragaria x ananassa HOM05D000230 ORTHO05D000176 9.4e-09 63.2 37 75.7
CiPaw.12G034900 Carya illinoinensis HOM05D000230 ORTHO05D000176 1.2e-08 62.8 37 78.4
Cc04_g10540 Coffea canephora HOM05D000230 ORTHO05D000176 1.2e-08 62.8 37 81.1
Hma1.2p1_0014F.1_g010070 Hydrangea macrophylla HOM05D000230 ORTHO05D000176 1.2e-08 62.8 37 86.5
Sed0027476 Sechium edule HOM05D000230 ORTHO05D000176 1.2e-08 62.8 36 80.6
EL10Ac7g18059 Beta vulgaris HOM05D000230 ORTHO05D000176 3.6e-08 61.2 37 73.0
Rhsim08G0183600 Rhododendron simsii HOM05D000230 ORTHO05D000176 3.6e-08 61.2 37 75.7
PSO729G0270 Papaver somniferum HOM05D000230 ORTHO05D000176 4.7e-08 60.8 37 75.7
PGR083G1307 Punica granatum HOM05D000230 ORTHO05D000176 4.7e-08 60.8 37 78.4
MBI04_g22931_MAGBIO Magnolia biondii HOM05D000230 ORTHO05D000176 6.1e-08 60.5 37 78.4
Peaxi162Scf00089g00840 Petunia axillaris HOM05D000230 ORTHO05D000176 6.1e-08 60.5 44 68.2
Ah.15g095390 Amaranthus hybridus HOM05D000230 ORTHO05D000176 8.0e-08 60.1 37 70.3
CAN.G472.42 Capsicum annuum HOM05D000230 ORTHO05D000176 8.0e-08 60.1 44 70.5
ECA232G0347 Erigeron canadensis HOM05D000230 ORTHO05D000176 8.0e-08 60.1 37 73.0
Nitab4.5_0001360g0050 Nicotiana tabacum HOM05D000230 ORTHO05D000176 8.0e-08 60.1 44 70.5
Nitab4.5_0002531g0060 Nicotiana tabacum HOM05D000230 ORTHO05D000176 8.0e-08 60.1 44 70.5
PGSC0003DMG400015233 Solanum tuberosum HOM05D000230 ORTHO05D000176 8.0e-08 60.1 44 70.5
PSO017G0382 Papaver somniferum HOM05D000230 ORTHO05D000176 1.0e-07 59.7 37 73.0
Solyc03g111570.4 Solanum lycopersicum HOM05D000230 ORTHO05D000176 1.4e-07 59.3 44 70.5
Sopen03g030690 Solanum pennellii HOM05D000230 ORTHO05D000176 1.4e-07 59.3 44 70.5
SHI17249 Sapria himalayana HOM05D000230 ORTHO05D000176 1.8e-07 58.9 37 73.0
GSVIVG01007560001 Vitis vinifera HOM05D000230 ORTHO05D000176 1.8e-07 58.9 37 73.0
RcHm_v2.0_Chr7g0191411 Rosa chinensis HOM05D000230 ORTHO05D000176 3.0e-07 58.2 37 70.3
Sed0009436 Sechium edule HOM05D000230 ORTHO05D000176 3.0e-07 58.2 36 75.0
CANSAT80G0238 Cannabis sativa HOM05D000230 ORTHO05D000176 4.0e-07 57.8 37 78.4
Eucgr.B00160 Eucalyptus grandis HOM05D000230 ORTHO05D000176 4.0e-07 57.8 38 78.9
Sc04g0001030 Simmondsia chinensis HOM05D000230 ORTHO05D000176 4.0e-07 57.8 37 70.3
Cpa.g.sc4.57 Carica papaya HOM05D000230 ORTHO05D000176 5.2e-07 57.4 55 56.4
HanXRQChr09g0272811 Helianthus annuus HOM05D000230 ORTHO05D000176 6.7e-07 57.0 37 70.3
Lsat_1_v5_gn_4_79080 Lactuca sativa HOM05D000230 ORTHO05D000176 6.7e-07 57.0 37 70.3
unitig_26.g9677 Utricularia gibba HOM05D000230 ORTHO05D000176 8.8e-07 56.6 37 70.3
CDE06G1217 Ceratophyllum demersum HOM05D000230 ORTHO05D000176 1.2e-06 56.2 37 73.0
Haze_07284 Corylus avellana HOM05D000230 ORTHO05D000176 2.0e-06 55.5 37 75.7
PSO478G2681 Papaver somniferum HOM05D000230 ORTHO05D000176 2.0e-06 55.5 37 67.6
Cfa018899 Carpinus fangiana HOM05D000230 ORTHO05D000176 2.6e-06 55.1 37 75.7
CANSAT25G1799 Cannabis sativa HOM05D000230 ORTHO05D000176 3.3e-06 54.7 37 75.7
THA.LOC104818199 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 3.3e-06 54.7 37 73.0
Sabra15G0111900 Salix brachista HOM05D000230 ORTHO05D000176 5.7e-06 53.9 49 63.3
HPP92_025452 Vanilla planifolia HOM05D000230 ORTHO05D000176 7.5e-06 53.5 44 63.6
Hund05624 Selenicereus undatus HOM05D000230 ORTHO05D000176 9.7e-06 53.1 37 67.6


User provided reference genes

Program Settings