Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000169 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 7.2e-25 116.3 54 100.0
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 7.8e-11 69.7 52 67.3
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 1.0e-10 69.3 47 74.5
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 2.3e-10 68.2 46 76.1
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 2.3e-10 68.2 47 74.5
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 2.9e-10 67.8 46 73.9
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 5.0e-10 67.0 56 57.1
Atru.chr12.1024 Acer truncatum HOM05D003456 ORTHO05D004082 6.6e-10 66.6 46 71.7
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 6.6e-10 66.6 46 73.9
Sc20g0001150 Simmondsia chinensis HOM05D003456 ORTHO05D004082 6.6e-10 66.6 47 68.1
THA.LOC104804331 Tarenaya hassleriana HOM05D003456 ORTHO05D004082 8.6e-10 66.2 47 70.2
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 1.1e-09 65.9 46 73.9
CsaV3_5G035380 Cucumis sativus L. HOM05D003456 ORTHO05D004082 1.1e-09 65.9 46 73.9
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 1.5e-09 65.5 46 69.6
CANSAT56G3878 Cannabis sativa HOM05D003456 ORTHO05D004082 1.9e-09 65.1 46 69.6
HanXRQChr12g0368091 Helianthus annuus HOM05D003456 ORTHO05D004082 1.9e-09 65.1 46 71.7
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 2.5e-09 64.7 46 69.6
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 2.5e-09 64.7 46 69.6
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 2.5e-09 64.7 46 69.6
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 3.3e-09 64.3 46 71.7
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 3.3e-09 64.3 46 71.7
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 3.3e-09 64.3 46 69.6
Sed0026028 Sechium edule HOM05D003456 ORTHO05D004082 3.3e-09 64.3 46 71.7
CANSAT56G1853 Cannabis sativa HOM05D003456 ORTHO05D004082 4.3e-09 63.9 46 67.4
Lsat_1_v5_gn_8_24141 Lactuca sativa HOM05D003456 ORTHO05D004082 4.3e-09 63.9 46 69.6
Lalb_Chr25g0288351 Lupinus albus HOM05D003456 ORTHO05D004082 4.3e-09 63.9 46 69.6
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 5.6e-09 63.5 46 69.6
Cpa.g.sc56.14 Carica papaya HOM05D003456 ORTHO05D004082 5.6e-09 63.5 46 67.4
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 5.6e-09 63.5 46 69.6
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 5.6e-09 63.5 46 67.4
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 5.6e-09 63.5 46 67.4
SGA_v2.0_scaffold62G21335 Striga asiatica HOM05D003456 ORTHO05D004082 5.6e-09 63.5 46 69.6
SGA_v2.0_scaffold85G26612 Striga asiatica HOM05D003456 ORTHO05D004082 5.6e-09 63.5 46 69.6
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 7.3e-09 63.2 46 67.4
arahy.Tifrunner.gnm1.ann1.KEI5RC Arachis hypogaea HOM05D003456 ORTHO05D004082 7.3e-09 63.2 47 66.0
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 7.3e-09 63.2 46 67.4
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 7.3e-09 63.2 46 67.4
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 7.3e-09 63.2 46 69.6
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 9.5e-09 62.8 46 73.9
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 9.5e-09 62.8 46 67.4
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 1.2e-08 62.4 45 68.9
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 1.2e-08 62.4 45 68.9
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 1.2e-08 62.4 46 69.6
Glyma.03G195000 Glycine max HOM05D003456 ORTHO05D004082 1.2e-08 62.4 47 63.8
Glyma.19G194700 Glycine max HOM05D003456 ORTHO05D004082 1.2e-08 62.4 47 63.8
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 1.2e-08 62.4 46 67.4
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 1.2e-08 62.4 46 67.4
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 1.2e-08 62.4 46 67.4
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 1.2e-08 62.4 46 67.4
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 1.2e-08 62.4 46 67.4
Lalb_Chr20g0111761 Lupinus albus HOM05D003456 ORTHO05D004082 1.6e-08 62.0 46 63.0
Nitab4.5_0001437g0010 Nicotiana tabacum HOM05D003456 ORTHO05D004082 1.6e-08 62.0 46 67.4
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 1.6e-08 62.0 46 67.4
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 1.6e-08 62.0 46 67.4
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 2.1e-08 61.6 47 63.8
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 2.1e-08 61.6 45 68.9
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 2.1e-08 61.6 48 62.5
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 2.1e-08 61.6 46 65.2
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 2.1e-08 61.6 46 63.0
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 2.1e-08 61.6 46 65.2
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 2.8e-08 61.2 46 67.4
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 2.8e-08 61.2 46 65.2
PGR031G3484 Punica granatum HOM05D003456 ORTHO05D004082 2.8e-08 61.2 46 67.4
Rhsim09G0141900 Rhododendron simsii HOM05D003456 ORTHO05D004082 2.8e-08 61.2 46 73.9
Sabra10G0187000 Salix brachista HOM05D003456 ORTHO05D004082 2.8e-08 61.2 46 65.2
arahy.Tifrunner.gnm1.ann1.C03M9B Arachis hypogaea HOM05D003456 ORTHO05D004082 3.6e-08 60.8 47 68.1
arahy.Tifrunner.gnm1.ann1.VF2KJZ Arachis hypogaea HOM05D003456 ORTHO05D004082 3.6e-08 60.8 47 68.1
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
FvH4_2g10490 Fragaria vesca HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
FvH4_6g18590 Fragaria vesca HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
FAN05G2371 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
FAN09G3852 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
FAN14G1410 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
FAN24G1424 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
Lj1g0011692 Lotus japonicus HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 65.2
Potri.010G238800 Populus trichocarpa HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
RcHm_v2.0_Chr3g0473171 Rosa chinensis HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
RcHm_v2.0_Chr7g0219151 Rosa chinensis HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
PGSC0003DMG400023988 Solanum tuberosum HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 65.2
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 3.6e-08 60.8 46 67.4
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
C09p13080 Brassica napus HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 60.9
SalBow6G0063 Salvia bowleyana HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 63.0
Solyc09g009460.4 Solanum lycopersicum HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 67.4
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 4.7e-08 60.5 46 67.4
unitig_0.g1020 Utricularia gibba HOM05D003456 ORTHO05D004082 4.7e-08 60.5 45 68.9
Aa31LG8G13940 Aethionema arabicum HOM05D003456 ORTHO05D004082 6.1e-08 60.1 45 62.2
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 6.1e-08 60.1 46 65.2
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 6.1e-08 60.1 48 60.4
Phvul.001G189600 Phaseolus vulgaris HOM05D003456 ORTHO05D004082 6.1e-08 60.1 46 63.0
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 6.1e-08 60.1 45 66.7
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 6.1e-08 60.1 48 66.7
CiPaw.09G013300 Carya illinoinensis HOM05D003456 ORTHO05D004082 8.0e-08 59.7 45 66.7
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 8.0e-08 59.7 46 63.0
Migut.F01607 Erythranthe guttata HOM05D003456 ORTHO05D004082 8.0e-08 59.7 44 63.6
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 8.0e-08 59.7 44 68.2
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 8.0e-08 59.7 48 62.5
Cpa.g.sc5.27 Carica papaya HOM05D003456 ORTHO05D004082 1.0e-07 59.3 46 65.2
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 1.0e-07 59.3 46 65.2
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 1.0e-07 59.3 41 70.7
PGR142G0161 Punica granatum HOM05D003456 ORTHO05D004082 1.0e-07 59.3 46 65.2
CAN.G397.10 Capsicum annuum HOM05D003456 ORTHO05D004082 1.4e-07 58.9 46 65.2
COL.COLO4_29759 Corchorus olitorius HOM05D003456 ORTHO05D004082 1.4e-07 58.9 48 66.7
Peaxi162Scf00290g00816 Petunia axillaris HOM05D003456 ORTHO05D004082 1.4e-07 58.9 44 68.2
ATR0789G023 Amborella trichopoda HOM05D003456 ORTHO05D004082 1.8e-07 58.5 41 70.7
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 1.8e-07 58.5 44 63.6
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.8e-07 58.5 44 63.6
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 1.8e-07 58.5 46 65.2
Gohir.A04G063300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.8e-07 58.5 44 65.9
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.8e-07 58.5 44 65.9
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 1.8e-07 58.5 44 65.9
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 1.8e-07 58.5 46 63.0
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 1.8e-07 58.5 44 63.6
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 1.8e-07 58.5 46 69.6
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 2.3e-07 58.2 44 61.4
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 2.3e-07 58.2 48 66.7
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 2.3e-07 58.2 44 61.4
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 3.1e-07 57.8 46 60.9
Thecc.09G106900 Theobroma cacao HOM05D003456 ORTHO05D004082 3.1e-07 57.8 48 66.7
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 4.0e-07 57.4 55 54.5
Gohir.D09G011800 Gossypium hirsutum HOM05D003456 ORTHO05D004082 4.0e-07 57.4 44 65.9
Gorai.006G013800 Gossypium raimondii HOM05D003456 ORTHO05D004082 4.0e-07 57.4 44 65.9
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 4.0e-07 57.4 44 63.6
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 5.2e-07 57.0 42 64.3
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 5.2e-07 57.0 42 64.3
Hund30565 Selenicereus undatus HOM05D003456 ORTHO05D004082 5.2e-07 57.0 46 67.4
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 5.2e-07 57.0 45 64.4
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 5.2e-07 57.0 44 59.1
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 6.8e-07 56.6 42 61.9
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 6.8e-07 56.6 41 65.9
FAN02G4247 Fragaria x ananassa HOM05D003456 ORTHO05D004082 8.9e-07 56.2 40 65.0
Gohir.A09G013133 Gossypium hirsutum HOM05D003456 ORTHO05D004082 8.9e-07 56.2 44 65.9
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 8.9e-07 56.2 41 63.4
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 1.2e-06 55.8 46 63.0
Hund30410 Selenicereus undatus HOM05D003456 ORTHO05D004082 2.0e-06 55.1 37 73.0
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 5.8e-06 53.5 36 66.7
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 5.8e-06 53.5 40 60.0
Nitab4.5_0001725g0170 Nicotiana tabacum HOM05D003456 ORTHO05D004082 9.8e-06 52.8 31 71.0


User provided reference genes

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