Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 6.0e-291 1003.4 499 100.0
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 6.7e-117 425.2 528 52.5
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 1.7e-112 410.6 345 67.8
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 2.2e-112 410.2 506 52.6
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 1.1e-111 407.9 519 50.7
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 4.2e-111 406.0 528 49.2
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 5.5e-111 405.6 319 70.2
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 6.1e-110 402.1 520 52.1
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 1.5e-108 397.5 325 67.4
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.6e-105 387.5 528 47.9
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 3.5e-105 386.3 525 48.2
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 5.9e-105 385.6 319 66.8
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 1.0e-104 384.8 316 64.6
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.7e-104 384.0 528 47.7
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.5e-103 380.9 524 47.1
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 2.5e-103 380.2 530 46.0
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 4.2e-103 379.4 527 48.8
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 7.2e-103 378.6 520 48.8
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 2.7e-102 376.7 320 65.6
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 2.0e-100 370.5 521 48.4
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 5.7e-100 369.0 513 46.4
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 1.3e-99 367.9 313 66.5
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 1.4e-98 364.4 563 44.9
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 5.4e-98 362.5 515 46.0
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 7.0e-98 362.1 529 45.4
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.6e-97 360.9 530 45.7
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 1.7e-96 357.5 540 44.6
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 1.7e-96 357.5 513 45.4
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 2.5e-95 353.6 518 46.5
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 7.2e-95 352.1 541 46.4
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 3.6e-94 349.7 525 44.6
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 3.0e-93 346.7 308 63.6
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 3.4e-92 343.2 313 63.9
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 9.8e-92 341.7 524 44.7
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.3e-91 341.3 334 62.0
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 8.3e-91 338.6 313 59.4
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 7.0e-90 335.5 314 64.0
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 4.5e-89 332.8 334 61.7
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.9e-88 330.1 323 62.5
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 3.3e-87 326.6 326 58.0
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 4.3e-87 326.2 511 43.2
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 1.2e-86 324.7 310 57.7
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 6.1e-86 322.4 564 40.8
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 4.0e-85 319.7 529 42.0
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 6.8e-85 318.9 542 42.6
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 8.9e-85 318.5 534 44.9
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 4.4e-84 316.2 514 42.8
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 1.4e-82 311.2 542 40.6
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.4e-82 310.5 524 42.6
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 2.4e-82 310.5 518 41.7
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 3.2e-82 310.1 314 57.6
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 4.6e-81 306.2 542 40.2
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 2.3e-80 303.9 262 62.2
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 9.5e-79 298.5 238 69.3
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 1.2e-78 298.1 316 56.3
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 1.6e-78 297.7 315 56.2
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 2.3e-77 293.9 340 54.7
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 6.8e-77 292.4 315 55.2
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 1.2e-76 291.6 325 57.5
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 4.4e-76 289.7 363 50.4
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.7e-75 287.7 313 55.0
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 3.7e-75 286.6 526 40.9
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 6.4e-75 285.8 319 54.9
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 2.4e-74 283.9 331 54.1
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 1.6e-73 281.2 287 59.2
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.7e-73 280.4 542 40.4
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 2.7e-73 280.4 548 42.7
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 4.6e-73 279.6 522 41.0
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 4.6e-73 279.6 510 40.8
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.0e-72 278.5 317 52.4
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 8.6e-72 275.4 510 41.2
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.9e-71 274.2 327 52.3
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 8.1e-70 268.9 511 38.9
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 8.1e-70 268.9 511 38.9
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 5.2e-69 266.2 393 44.3
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.2e-68 265.0 297 53.2
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 3.4e-68 263.5 389 44.5
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 1.7e-67 261.2 307 51.5
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 8.3e-67 258.8 558 37.3
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 3.5e-65 253.4 352 48.0
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 1.9e-63 247.7 499 41.3
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 8.1e-62 242.3 324 50.0
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 1.4e-61 241.5 342 48.2
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 3.1e-61 240.4 530 37.0
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 6.8e-61 239.2 314 50.0
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 7.6e-60 235.7 204 61.3
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 6.4e-59 232.6 545 34.3
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 6.4e-59 232.6 355 45.9
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 7.1e-58 229.2 539 36.7
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 3.6e-54 216.9 306 48.7
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 6.2e-54 216.1 321 49.8
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 5.2e-53 213.0 319 45.8
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 8.9e-53 212.2 242 54.1
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 6.6e-48 196.1 286 48.3
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 6.2e-46 189.5 328 43.6
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 2.9e-43 180.6 244 52.0
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 1.4e-42 178.3 512 34.8
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 5.4e-42 176.4 321 41.4
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 1.2e-41 175.3 339 40.7
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 3.9e-40 170.2 333 41.1
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.6e-38 164.9 295 43.4
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 5.3e-37 159.8 342 38.6
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 5.8e-36 156.4 338 38.2
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 1.6e-33 148.3 326 38.0
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 7.9e-33 146.0 314 37.9
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 3.0e-32 144.1 336 37.8
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 1.5e-31 141.7 309 38.2
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.3e-30 138.7 313 38.3
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 3.7e-30 137.1 322 39.1
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 4.8e-30 136.7 332 37.7
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 8.1e-30 136.0 329 33.7
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 9.0e-29 132.5 315 36.5
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 1.5e-28 131.7 288 38.2
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.0e-27 129.0 320 39.1
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 4.9e-27 126.7 309 39.8
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 8.4e-27 125.9 278 38.5
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 7.1e-26 122.9 350 34.0
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 5.7e-23 113.2 307 35.8
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 5.7e-23 113.2 307 35.8
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 1.4e-21 108.6 278 36.7
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 5.3e-21 106.7 334 34.1
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 2.6e-20 104.4 373 32.7
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 2.6e-20 104.4 351 33.6
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 6.5e-19 99.8 248 35.9
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 1.2e-17 95.5 96 59.4
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 7.9e-17 92.8 58 77.6
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 1.3e-14 85.5 121 50.4
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 4.8e-14 83.6 102 57.8
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 2.6e-12 77.8 63 69.8
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 7.7e-12 76.3 105 44.8
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 1.9e-10 71.6 164 40.9
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 2.5e-10 71.2 62 61.3
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 7.2e-10 69.7 147 40.8
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 6.1e-09 66.6 48 62.5
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 7.9e-09 66.2 242 36.8


User provided reference genes

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