Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.3e-247 859.4 458 100.0
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.1e-217 758.4 414 98.3
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 8.2e-170 600.9 394 81.7
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 7.4e-163 577.8 413 76.5
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 2.1e-157 559.7 407 76.7
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.2e-154 549.7 414 74.6
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 7.5e-147 524.6 413 72.4
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.4e-140 503.8 405 70.6
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 5.7e-139 498.4 404 68.8
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.3e-138 495.0 406 68.5
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 2.0e-136 490.0 413 67.1
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 5.9e-136 488.4 406 67.5
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 7.8e-136 488.0 404 67.3
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.3e-135 486.5 404 68.6
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 2.3e-135 486.5 404 68.6
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 1.5e-134 483.8 404 69.1
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.6e-133 480.3 404 68.1
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.7e-133 478.8 503 58.1
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 4.0e-132 475.7 404 68.1
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 7.5e-131 471.5 404 66.1
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 2.2e-130 469.9 404 65.1
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 1.1e-129 467.6 410 65.1
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 3.5e-128 462.6 404 66.1
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 1.7e-127 460.3 404 63.9
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 3.0e-127 459.5 405 64.9
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 9.5e-126 454.5 393 65.6
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 6.8e-124 448.4 430 61.2
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 8.9e-124 448.0 404 62.6
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.0e-123 446.8 395 64.6
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 9.8e-123 444.5 398 63.8
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.2e-122 443.4 412 63.1
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 2.9e-122 443.0 399 62.7
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 2.9e-122 443.0 412 62.1
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 4.9e-122 442.2 414 62.1
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 6.4e-122 441.8 404 62.1
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 1.1e-121 441.0 404 62.1
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.4e-121 438.7 412 62.4
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 3.5e-120 436.0 387 63.6
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 3.5e-120 436.0 410 61.0
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 3.5e-120 436.0 404 62.1
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 7.8e-120 434.9 410 62.4
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 1.3e-119 434.1 405 61.0
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.3e-119 434.1 406 64.3
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.7e-119 433.7 409 61.1
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 2.3e-119 433.3 404 61.4
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 3.0e-119 433.0 407 61.2
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 3.9e-119 432.6 404 62.4
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 3.9e-119 432.6 447 57.9
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 2.5e-118 429.9 412 60.9
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.6e-118 428.7 331 74.9
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 9.5e-118 427.9 416 60.1
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.6e-117 427.2 381 62.2
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 4.7e-117 425.6 408 60.3
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 1.4e-116 424.1 406 63.3
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 5.2e-116 422.2 386 61.9
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 6.8e-116 421.8 374 63.1
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 6.8e-116 421.8 395 64.3
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 8.9e-116 421.4 409 59.9
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.0e-115 420.2 347 67.4
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 3.4e-115 419.5 374 63.1
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 4.4e-115 419.1 390 60.0
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 7.5e-115 418.3 377 63.7
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 9.9e-115 417.9 409 59.2
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 9.9e-115 417.9 399 58.4
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.3e-114 417.5 380 66.1
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.9e-114 416.4 377 63.4
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 4.9e-114 415.6 328 71.3
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 4.9e-114 415.6 390 62.6
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 2.4e-113 413.3 405 59.8
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 4.1e-113 412.5 342 68.4
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.1e-112 410.2 413 59.6
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 3.5e-112 409.5 409 58.9
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 3.5e-112 409.5 494 51.4
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.3e-111 407.5 370 64.3
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.0e-111 406.4 384 60.7
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 5.1e-111 405.6 406 59.1
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 5.1e-111 405.6 406 60.1
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 1.1e-110 404.4 409 58.9
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 8.1e-109 398.3 406 58.1
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 4.4e-107 392.5 407 58.7
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.3e-106 391.0 352 64.2
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 2.9e-106 389.8 408 55.9
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.3e-103 380.9 396 57.3
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 3.0e-103 379.8 424 55.0
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 3.9e-103 379.4 419 56.8
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 1.4e-100 370.9 395 57.7
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 5.2e-100 369.0 416 54.8
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 9.0e-100 368.2 386 55.2
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 3.4e-99 366.3 404 53.7
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 5.8e-99 365.5 404 53.2
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 4.2e-97 359.4 404 51.7
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 9.3e-97 358.2 404 53.5
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 7.8e-96 355.1 417 52.8
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 3.0e-95 353.2 404 52.7
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 3.9e-95 352.8 334 62.3
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 4.3e-94 349.4 404 52.0
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 7.3e-94 348.6 401 52.6
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 1.6e-93 347.4 405 52.8
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 6.2e-93 345.5 404 51.7
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 8.1e-93 345.1 408 51.2
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 6.4e-90 335.5 404 50.7
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.9e-89 334.0 339 59.3
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.4e-89 333.6 404 48.5
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.4e-89 333.6 404 50.7
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 5.6e-86 322.4 427 48.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 7.4e-86 322.0 376 54.5
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 1.7e-82 310.8 422 45.3
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 3.2e-81 306.6 377 50.9
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 7.9e-80 302.0 280 63.9
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 9.0e-68 261.9 405 45.2
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 6.1e-64 249.2 332 48.5
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 2.3e-63 247.3 237 56.5
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 2.2e-58 230.7 262 56.9
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 1.4e-55 221.5 312 51.9
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.8e-55 221.1 227 56.4
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 8.8e-55 218.8 305 44.9
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 7.4e-54 215.7 344 45.6
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.8e-52 211.1 408 37.7
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 5.9e-43 179.5 410 34.4
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.1e-33 148.7 127 67.7
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.4e-30 137.1 353 33.1
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 4.8e-29 133.3 148 51.4
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 4.8e-29 133.3 148 51.4
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 5.0e-26 123.2 125 51.2
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.2e-25 119.4 172 48.8
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.5e-25 119.0 109 58.7
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 3.4e-22 110.5 98 71.4
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 1.3e-21 108.6 142 47.2
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.4e-20 104.4 73 82.2
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 4.1e-20 103.6 279 31.2
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.4e-12 78.6 65 66.2
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.9e-12 78.2 184 38.0
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 5.4e-12 76.6 88 53.4
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.7e-11 74.3 103 44.7
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 1.1e-09 68.9 121 38.8
vmacro01747 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.6e-08 65.1 103 42.7
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.8e-08 64.3 42 81.0
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 1.4e-07 62.0 74 58.1
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.3e-07 61.2 31 74.2
MELO3C030134.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.2e-06 58.9 52 67.3
MELO3C030860.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.6e-06 57.8 47 72.3
MELO3C031967.2 Cucumis melo HOM05D005133 ORTHO05D165940 2.6e-06 57.8 56 67.9
MELO3C032291.2 Cucumis melo HOM05D005133 ORTHO05D167678 5.8e-06 56.6 45 71.1
MELO3C033838.2 Cucumis melo HOM05D005133 ORTHO05D166559 7.5e-06 56.2 48 66.7


User provided reference genes

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