Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 4.3e-26 120.6 61 100.0
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 9.7e-10 66.2 52 59.6
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 6.3e-09 63.5 51 68.6
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 6.3e-09 63.5 57 61.4
CSS0017312 Camellia sinensis var. sinensis HOM05D058076 ORTHO05D112467 1.1e-08 62.8 59 55.9
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.4e-08 62.4 57 61.4
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 2.4e-08 61.6 57 57.9
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.4e-08 61.6 57 59.6
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 3.1e-08 61.2 57 59.6
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 3.1e-08 61.2 57 59.6
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 3.1e-08 61.2 57 59.6
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 3.1e-08 61.2 57 59.6
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.1e-08 61.2 57 59.6
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 3.1e-08 61.2 57 59.6
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 3.1e-08 61.2 57 59.6
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 3.1e-08 61.2 57 59.6
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 3.1e-08 61.2 57 59.6
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 4.1e-08 60.8 57 57.9
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 4.1e-08 60.8 57 57.9
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 4.1e-08 60.8 57 57.9
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 4.1e-08 60.8 57 57.9
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 4.1e-08 60.8 57 57.9
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 5.3e-08 60.5 57 57.9
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 5.3e-08 60.5 57 56.1
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 6.9e-08 60.1 57 59.6
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 6.9e-08 60.1 52 59.6
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.9e-08 60.1 57 56.1
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 6.9e-08 60.1 57 59.6
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 57.9
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 57.9
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 57.9
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 57.9
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 57.9
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 57.9
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 57.9
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 57.9
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 57.9
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 56.1
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 9.1e-08 59.7 57 56.1
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.2e-07 59.3 57 56.1
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.2e-07 59.3 57 56.1
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.2e-07 59.3 57 56.1
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.2e-07 59.3 57 56.1
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.5e-07 58.9 57 54.4
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.5e-07 58.9 57 54.4
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.5e-07 58.9 57 54.4
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.5e-07 58.9 57 54.4
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.5e-07 58.9 57 54.4
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.5e-07 58.9 57 54.4
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.0e-07 58.5 57 56.1
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.0e-07 58.5 57 56.1
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 2.0e-07 58.5 57 56.1
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.0e-07 58.5 57 56.1
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.0e-07 58.5 57 54.4
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 2.6e-07 58.2 57 54.4
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 2.6e-07 58.2 57 52.6
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.6e-07 58.2 57 52.6
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.6e-07 58.2 57 56.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.6e-07 58.2 57 56.1
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.6e-07 58.2 57 56.1
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 2.6e-07 58.2 57 56.1
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 2.6e-07 58.2 52 57.7
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 2.6e-07 58.2 57 52.6
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.6e-07 58.2 51 60.8
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 3.4e-07 57.8 50 62.0
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 3.4e-07 57.8 50 62.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 3.4e-07 57.8 52 57.7
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.4e-07 57.8 57 52.6
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 3.4e-07 57.8 52 57.7
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 3.4e-07 57.8 57 54.4
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.4e-07 57.8 57 52.6
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 4.5e-07 57.4 57 52.6
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 52.6
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 52.6
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 52.6
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 52.6
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 52.6
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 52.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 52.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 57.9
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 49.1
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 56.1
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 56.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 52.6
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 54.4
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.5e-07 57.4 57 54.4
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 5.9e-07 57.0 52 57.7
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 5.9e-07 57.0 52 59.6
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 5.9e-07 57.0 57 50.9
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 5.9e-07 57.0 57 50.9
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 5.9e-07 57.0 57 54.4
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.9e-07 57.0 57 54.4
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 5.9e-07 57.0 57 56.1
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 5.9e-07 57.0 57 52.6
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 5.9e-07 57.0 57 56.1
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.9e-07 57.0 57 54.4
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 5.9e-07 57.0 52 55.8
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.7e-07 56.6 57 56.1
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 7.7e-07 56.6 57 54.4
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 7.7e-07 56.6 57 52.6
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 7.7e-07 56.6 57 54.4
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 7.7e-07 56.6 52 55.8
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 7.7e-07 56.6 57 50.9
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 7.7e-07 56.6 57 50.9
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 7.7e-07 56.6 57 54.4
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 7.7e-07 56.6 57 52.6
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.0e-06 56.2 49 63.3
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.0e-06 56.2 57 54.4
CSS0031324 Camellia sinensis var. sinensis HOM05D058076 ORTHO05D109172 1.3e-06 55.8 58 58.6
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.3e-06 55.8 57 54.4
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.3e-06 55.8 50 62.0
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.3e-06 55.8 57 50.9
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.7e-06 55.5 52 57.7
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.7e-06 55.5 51 56.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.7e-06 55.5 52 57.7
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.7e-06 55.5 57 52.6
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.7e-06 55.5 57 52.6
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.7e-06 55.5 57 47.4
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.7e-06 55.5 57 47.4
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.7e-06 55.5 57 50.9
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.7e-06 55.5 57 50.9
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.7e-06 55.5 52 53.8
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.7e-06 55.5 57 50.9
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 2.2e-06 55.1 52 55.8
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 2.2e-06 55.1 57 54.4
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 2.2e-06 55.1 57 49.1
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 2.9e-06 54.7 57 50.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.9e-06 54.7 57 50.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.9e-06 54.7 57 50.9
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 2.9e-06 54.7 57 50.9
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.9e-06 54.7 57 50.9
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.9e-06 54.7 57 50.9
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.9e-06 54.7 57 50.9
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.9e-06 54.7 57 52.6
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 3.8e-06 54.3 52 55.8
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.8e-06 54.3 51 58.8
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 3.8e-06 54.3 51 58.8
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.8e-06 54.3 57 50.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 5.0e-06 53.9 52 55.8
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 5.0e-06 53.9 57 50.9
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 6.5e-06 53.5 57 50.9
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.5e-06 53.5 57 52.6
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 8.5e-06 53.1 57 47.4


User provided reference genes

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