Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000139 Camellia sinensis var. sinensis HOM05D007148 ORTHO05D009047 1.2e-57 226.1 100 100.0
Dinv35791 Davidia involucrata HOM05D007148 ORTHO05D009047 3.7e-14 81.6 43 79.1
Actinidia31326 Actinidia chinensis HOM05D007148 ORTHO05D009047 8.1e-14 80.5 43 76.7
Hma1.2p1_2076F.1_g313310 Hydrangea macrophylla HOM05D007148 ORTHO05D009047 1.8e-13 79.3 43 74.4
Manes.08G011400 Manihot esculenta HOM05D007148 ORTHO05D009047 6.9e-13 77.4 46 71.7
Prupe.7G128700 Prunus persica HOM05D007148 ORTHO05D009047 6.9e-13 77.4 43 74.4
vmacro08784 Vaccinium macrocarpon HOM05D007148 ORTHO05D009047 9.0e-13 77.0 43 74.4
Atru.chr8.1789 Acer truncatum HOM05D007148 ORTHO05D009047 2.0e-12 75.9 43 72.1
FAN09G1323 Fragaria x ananassa HOM05D007148 ORTHO05D009047 2.0e-12 75.9 42 73.8
GSVIVG01033649001 Vitis vinifera HOM05D007148 ORTHO05D009047 2.0e-12 75.9 43 72.1
Ciclev10012080m.g Citrus clementina HOM05D007148 ORTHO05D009047 2.6e-12 75.5 43 74.4
FAN02G0401 Fragaria x ananassa HOM05D007148 ORTHO05D009047 4.5e-12 74.7 42 73.8
Rhsim04G0144100 Rhododendron simsii HOM05D007148 ORTHO05D009047 5.8e-12 74.3 43 72.1
RcHm_v2.0_Chr3g0470391 Rosa chinensis HOM05D007148 ORTHO05D009047 1.7e-11 72.8 43 67.4
FAN05G4699 Fragaria x ananassa HOM05D007148 ORTHO05D009047 2.2e-11 72.4 53 60.4
FAN05G5619 Fragaria x ananassa HOM05D007148 ORTHO05D009047 2.9e-11 72.0 42 71.4
FvH4_6g16490 Fragaria vesca HOM05D007148 ORTHO05D009047 3.8e-11 71.6 42 71.4
FAN14G3336 Fragaria x ananassa HOM05D007148 ORTHO05D009047 3.8e-11 71.6 42 71.4
Sed0015836 Sechium edule HOM05D007148 ORTHO05D009047 3.8e-11 71.6 42 64.3
Thecc.05G068300 Theobroma cacao HOM05D007148 ORTHO05D009047 4.9e-11 71.2 43 67.4
AUR62042066 Chenopodium quinoa HOM05D007148 ORTHO05D009047 6.5e-11 70.9 42 61.9
CsaV3_6G039960 Cucumis sativus L. HOM05D007148 ORTHO05D009047 6.5e-11 70.9 43 62.8
Sabra06G0097500 Salix brachista HOM05D001037 ORTHO05D000888 6.5e-11 70.9 43 69.8
Duzib093G0361 Durio zibethinus HOM05D007148 ORTHO05D009047 8.4e-11 70.5 43 67.4
Potri.006G123300 Populus trichocarpa HOM05D007148 ORTHO05D009047 8.4e-11 70.5 43 69.8
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 1.1e-10 70.1 41 68.3
ECA233G5868 Erigeron canadensis HOM05D007148 ORTHO05D009047 1.9e-10 69.3 42 69.0
Cc06_g04310 Coffea canephora HOM05D007148 ORTHO05D009047 2.5e-10 68.9 46 67.4
MELO3C024473.2 Cucumis melo HOM05D007148 ORTHO05D009047 2.5e-10 68.9 43 60.5
Cpa.g.sc102.25 Carica papaya HOM05D007148 ORTHO05D009047 3.2e-10 68.6 43 69.8
Glyma.10G054600 Glycine max HOM05D007148 ORTHO05D009047 3.2e-10 68.6 42 66.7
Phvul.007G147800 Phaseolus vulgaris HOM05D007148 ORTHO05D009047 3.2e-10 68.6 46 58.7
AUR62026914 Chenopodium quinoa HOM05D007148 ORTHO05D009047 5.5e-10 67.8 48 54.2
EL10Ac7g16644 Beta vulgaris HOM05D007148 ORTHO05D009047 7.1e-10 67.4 41 65.9
QL07p043079 Quercus lobata HOM05D007148 ORTHO05D009047 7.1e-10 67.4 42 69.0
Medtr1g063080 Medicago truncatula HOM05D007148 ORTHO05D009047 9.3e-10 67.0 46 60.9
MD04G1092300 Malus domestica HOM05D007148 ORTHO05D009047 1.2e-09 66.6 39 66.7
SalBow3G0477 Salvia bowleyana HOM05D007148 ORTHO05D009047 1.2e-09 66.6 48 62.5
Eucgr.A01669 Eucalyptus grandis HOM05D007148 ORTHO05D009047 2.1e-09 65.9 43 58.1
HanXRQChr13g0400991 Helianthus annuus HOM05D007148 ORTHO05D009047 2.1e-09 65.9 42 59.5
MD12G1110100 Malus domestica HOM05D007148 ORTHO05D009047 3.5e-09 65.1 37 70.3
Hund20337 Selenicereus undatus HOM05D007148 ORTHO05D009047 4.6e-09 64.7 45 57.8
Gohir.A01G213200 Gossypium hirsutum HOM05D007148 ORTHO05D009047 6.0e-09 64.3 43 58.1
Lalb_Chr02g0155781 Lupinus albus HOM05D007148 ORTHO05D009047 6.0e-09 64.3 46 56.5
Oeu053686.1 Olea europaea HOM05D007148 ORTHO05D009047 6.0e-09 64.3 43 65.1
CiPaw.09G171600 Carya illinoinensis HOM05D007148 ORTHO05D009047 7.9e-09 63.9 43 55.8
DCAR_014515 Daucus carota HOM05D007148 ORTHO05D009047 7.9e-09 63.9 44 63.6
Glyma.13G141800 Glycine max HOM05D007148 ORTHO05D009047 7.9e-09 63.9 42 61.9
Lj5g0011331 Lotus japonicus HOM05D007148 ORTHO05D009047 7.9e-09 63.9 43 55.8
SGA_v2.0_scaffold40G15492 Striga asiatica HOM05D007148 ORTHO05D009047 1.0e-08 63.5 42 64.3
Lsat_1_v5_gn_6_24961 Lactuca sativa HOM05D007148 ORTHO05D009047 1.3e-08 63.2 42 61.9
VMungo0720G1794 Vigna mungo HOM05D007148 ORTHO05D009047 1.3e-08 63.2 46 56.5
Ah.08g211560 Amaranthus hybridus HOM05D007148 ORTHO05D009047 1.8e-08 62.8 42 59.5
Psat6g073400 Pisum sativum HOM05D007148 ORTHO05D009047 1.8e-08 62.8 48 56.2
Nitab4.5_0000578g0130 Nicotiana tabacum HOM05D007148 ORTHO05D009047 2.3e-08 62.4 39 64.1
PGR004G2178 Punica granatum HOM05D007148 ORTHO05D009047 3.0e-08 62.0 43 62.8
Ca_11512_v3 Cicer arietinum L. HOM05D000261 ORTHO05D009047 3.9e-08 61.6 43 60.5
ClCG04G009380 Citrullus lanatus HOM05D007148 ORTHO05D009047 3.9e-08 61.6 43 58.1
Gorai.002G246600 Gossypium raimondii HOM05D007148 ORTHO05D009047 3.9e-08 61.6 34 67.6
arahy.Tifrunner.gnm1.ann1.IRYX6E Arachis hypogaea HOM05D007148 ORTHO05D009047 5.1e-08 61.2 46 54.3
arahy.Tifrunner.gnm1.ann1.J3RTVJ Arachis hypogaea HOM05D007148 ORTHO05D009047 5.1e-08 61.2 46 54.3
Peaxi162Scf00847g00313 Petunia axillaris HOM05D007148 ORTHO05D009047 5.1e-08 61.2 40 62.5
TAR633G2546 Trochodendron aralioides HOM05D007148 ORTHO05D009047 6.7e-08 60.8 42 57.1
Solyc09g008260.3 Solanum lycopersicum HOM05D007148 ORTHO05D009047 8.7e-08 60.5 32 75.0
Gohir.D01G204200 Gossypium hirsutum HOM05D007148 ORTHO05D009047 1.1e-07 60.1 34 64.7
CANSAT80G2677 Cannabis sativa HOM05D007148 ORTHO05D009047 1.9e-07 59.3 43 55.8
TPR.G11276 Trifolium pratense HOM05D007148 ORTHO05D009047 3.3e-07 58.5 46 54.3
THA.LOC104826916 Tarenaya hassleriana HOM05D007148 ORTHO05D009047 7.4e-07 57.4 35 65.7
Aqoxy2G01740 Aquilegia oxysepala HOM05D007148 ORTHO05D009047 1.3e-06 56.6 33 66.7
MBI19_g45279_MAGBIO Magnolia biondii HOM05D007148 ORTHO05D009047 1.6e-06 56.2 42 54.8
Sopen09g003080 Solanum pennellii HOM05D007148 ORTHO05D009047 2.1e-06 55.8 32 71.9
Mapoly0046s0027 Marchantia polymorpha HOM05D007148 ORTHO05D009047 6.2e-06 54.3 42 54.8


User provided reference genes

Program Settings