Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 0.0e+00 2137.5 1064 100.0
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1990.3 1076 91.8
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 0.0e+00 1957.2 1076 90.6
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 0.0e+00 1927.1 1180 83.2
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 0.0e+00 1909.0 1076 88.2
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 0.0e+00 1890.5 1076 87.4
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 0.0e+00 1882.1 1076 86.6
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 0.0e+00 1875.1 1077 86.7
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 0.0e+00 1875.1 1077 87.1
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 0.0e+00 1873.6 1076 86.3
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 0.0e+00 1873.2 1077 86.3
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 0.0e+00 1861.3 1076 85.9
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1860.5 1075 85.8
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 0.0e+00 1855.5 1074 86.5
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 0.0e+00 1854.3 1076 85.6
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1853.6 1075 85.5
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 0.0e+00 1853.2 1076 84.9
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1852.4 1074 86.5
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 0.0e+00 1851.6 1109 83.6
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1845.9 1076 85.1
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 0.0e+00 1845.5 1074 84.3
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 0.0e+00 1843.9 1072 85.2
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1841.6 1075 85.1
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1840.5 1074 85.9
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1840.5 1075 85.0
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1838.9 1075 84.9
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1837.8 1110 83.8
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1833.9 1074 85.6
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 0.0e+00 1833.2 1080 84.6
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1830.8 1060 86.0
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 0.0e+00 1830.1 1076 84.4
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1830.1 1074 84.5
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 0.0e+00 1828.1 1076 84.6
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1827.8 1075 83.3
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1826.6 1075 84.7
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1825.4 1075 83.7
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 0.0e+00 1825.1 1073 84.3
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1822.8 1075 84.4
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1820.8 1083 82.5
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1819.7 1074 83.8
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1818.9 1076 84.1
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1818.1 1102 81.5
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1816.2 1083 82.5
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1815.0 1073 85.1
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1813.9 1074 83.8
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 0.0e+00 1811.2 1076 83.3
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1810.0 1074 83.2
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 0.0e+00 1809.7 1074 83.8
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 0.0e+00 1808.5 1076 82.3
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1808.1 1075 82.5
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 0.0e+00 1808.1 1076 82.3
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1804.3 1075 82.7
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1803.1 1076 83.1
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1802.7 1075 82.4
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 0.0e+00 1799.3 1076 82.7
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1799.3 1076 82.7
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 0.0e+00 1794.2 1075 83.0
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1794.2 1078 82.7
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1792.3 1074 82.5
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1782.3 1073 82.1
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1779.2 1075 81.7
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 0.0e+00 1777.7 1071 83.1
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1776.1 1075 81.4
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1773.8 1075 82.0
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 0.0e+00 1768.8 1076 82.2
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 0.0e+00 1767.7 1087 82.0
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 0.0e+00 1766.9 1073 82.2
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 0.0e+00 1765.4 1081 81.5
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1764.6 1078 81.7
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1763.4 1025 85.4
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 0.0e+00 1763.0 1120 78.7
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1761.5 1073 81.0
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1760.3 1080 80.7
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1753.0 1080 80.6
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 0.0e+00 1744.6 1075 80.7
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 0.0e+00 1744.2 1080 80.4
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 0.0e+00 1743.8 1080 80.5
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 0.0e+00 1743.8 1080 80.3
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 0.0e+00 1737.6 1079 80.5
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 0.0e+00 1732.6 1079 80.4
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 0.0e+00 1732.2 1079 80.1
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1731.8 1079 80.3
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 0.0e+00 1731.1 1079 80.2
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1729.5 1079 80.2
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1729.5 1079 80.2
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 0.0e+00 1726.5 1080 80.2
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1724.9 1071 79.7
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 0.0e+00 1711.0 1072 78.7
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 0.0e+00 1700.6 1076 79.6
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 0.0e+00 1699.1 1105 77.6
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1688.7 1075 80.1
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 0.0e+00 1684.8 1075 78.9
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 0.0e+00 1682.9 1047 79.6
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 0.0e+00 1682.5 1088 78.6
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1658.3 1073 77.3
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1658.3 1026 79.4
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 0.0e+00 1649.0 1070 75.8
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 0.0e+00 1643.6 1195 72.4
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 0.0e+00 1634.8 1069 75.6
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 0.0e+00 1600.9 962 82.8
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 0.0e+00 1592.8 1071 77.0
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 0.0e+00 1552.7 1501 57.8
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 0.0e+00 1552.7 949 81.5
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1538.9 959 81.0
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1516.9 953 79.2
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 0.0e+00 1491.1 888 85.0
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 0.0e+00 1471.4 1078 68.5
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 0.0e+00 1412.1 1074 66.2
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 1404.4 1080 65.3
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1394.8 825 84.7
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 1377.5 1086 64.0
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1362.8 845 80.9
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1309.3 787 81.2
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 0.0e+00 1264.2 957 66.8
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1165.6 1066 60.2
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 0.0e+00 1144.8 762 76.2
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1139.4 1067 59.3
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 0.0e+00 1130.5 642 87.1
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 0.0e+00 1096.6 997 60.9
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1089.3 909 64.5
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.0e-255 885.9 529 82.8
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 9.9e-227 791.2 539 73.8
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 1.0e-215 754.6 531 71.6
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 7.2e-209 731.9 530 70.9
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 6.7e-191 672.2 676 52.4
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 1.1e-190 671.4 1025 43.9
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 3.2e-177 626.7 449 71.0
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 8.6e-170 602.1 370 81.1
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 1.8e-164 584.3 1197 33.6
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 1.4e-124 451.8 317 75.4
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 8.7e-114 416.0 209 97.1
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 1.1e-113 415.6 266 78.2
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.8e-106 391.7 423 54.1
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 3.7e-104 384.0 306 64.7
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 4.0e-103 380.6 210 86.7
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 3.6e-91 340.9 206 81.1
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 1.7e-88 332.0 183 85.2
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 3.2e-84 317.8 343 52.5
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 1.1e-81 309.3 173 85.0
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 2.6e-65 255.0 450 39.1
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 5.5e-60 237.3 175 66.3
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 2.1e-59 235.3 137 78.1
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 1.5e-57 229.2 125 88.0
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.1e-55 223.0 128 81.2
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 5.2e-50 204.1 137 73.7
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 3.5e-46 191.4 473 33.0
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 3.9e-45 188.0 447 33.6
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 8.0e-43 180.3 440 33.2
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 1.5e-41 176.0 132 60.6
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 1.4e-34 152.9 94 76.6
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 1.3e-32 146.4 136 61.0
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 1.2e-30 139.8 110 66.4
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 1.2e-30 139.8 110 66.4
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 1.2e-30 139.8 110 66.4
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 8.6e-29 133.7 94 64.9
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 4.4e-25 121.3 73 76.7
MBI11_g41071_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 9.9e-25 120.2 76 72.4
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.2e-24 119.0 76 72.4
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.2e-24 119.0 76 72.4
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 8.4e-24 117.1 75 72.0
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 1.1e-23 116.7 61 93.4
MBI11_g39904_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.1e-23 116.7 73 74.0
HPP92_010571 Vanilla planifolia HOM05D003479 ORTHO05D004659 6.6e-21 107.5 142 48.6
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 9.6e-20 103.6 51 94.1
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 1.2e-17 96.7 92 59.8
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 7.1e-15 87.4 46 87.0
FAN14G2177 Fragaria x ananassa HOM05D003479 ORTHO05D015055 1.3e-13 83.2 44 88.6
MBI08_g20552_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D000004 2.1e-11 75.9 61 65.6
BolC8t51271H Brassica oleracea HOM05D003479 ORTHO05D040158 2.8e-11 75.5 44 68.2
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 2.8e-11 75.5 129 38.0
Sed0003575 Sechium edule HOM05D003479 ORTHO05D019150 6.9e-10 70.9 157 33.1
C08p36950 Brassica napus HOM05D003479 ORTHO05D040158 1.5e-09 69.7 45 66.7
CDE05G2601 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.5e-09 69.7 43 76.7
MD09G1291900 Malus domestica HOM05D003479 ORTHO05D004659 1.4e-07 63.2 35 77.1
PRCOL_00006887 Prasinoderma coloniale HOM05D000749 ORTHO05D001296 1.4e-07 63.2 268 24.6
MBI11_g09451_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 6.0e-06 57.8 41 68.3


User provided reference genes

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