Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.1e-179 631.7 331 100.0
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.0e-153 544.7 280 99.3
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 7.6e-133 477.6 331 76.4
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.4e-131 472.6 328 75.0
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 2.1e-130 469.5 332 72.9
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 4.8e-127 458.4 330 71.5
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 6.9e-126 454.5 330 71.2
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 4.4e-125 451.8 332 71.7
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.3e-124 450.3 330 71.5
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.9e-121 438.7 330 70.3
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.5e-120 436.0 329 69.6
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 4.3e-120 435.3 326 69.6
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 9.6e-120 434.1 331 69.8
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 5.3e-118 428.3 332 67.5
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 6.9e-118 427.9 332 67.8
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 2.6e-117 426.0 368 65.2
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 2.2e-116 422.9 331 66.2
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.9e-116 422.5 333 67.3
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.2e-114 417.2 331 66.8
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.2e-114 417.2 332 66.3
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.7e-114 416.0 332 66.6
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 4.6e-114 415.2 331 64.7
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 6.0e-114 414.8 332 64.8
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 7.9e-114 414.5 331 63.7
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 3.9e-113 412.1 331 64.4
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 5.1e-113 411.8 330 64.2
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.1e-112 410.6 332 67.2
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.1e-112 410.6 331 63.7
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 7.4e-112 407.9 331 65.0
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 7.4e-112 407.9 332 66.6
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.6e-111 406.8 328 65.5
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 2.1e-111 406.4 331 65.9
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.2e-111 404.8 331 63.1
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.4e-110 403.7 328 65.2
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.8e-110 403.3 336 62.8
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.2e-109 400.6 332 64.8
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 2.0e-109 399.8 323 65.3
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.9e-108 396.0 331 64.0
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-107 394.0 329 64.4
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 3.2e-107 392.5 331 63.4
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.2e-107 392.1 335 63.6
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 5.5e-107 391.7 330 63.0
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 7.1e-107 391.3 331 63.7
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 2.7e-106 389.4 331 62.2
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-105 387.1 331 63.1
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 5.1e-105 385.2 332 61.4
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 6.7e-105 384.8 332 61.7
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.5e-104 383.6 331 61.6
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.5e-104 383.6 335 63.0
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.9e-104 383.3 333 62.8
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 3.3e-104 382.5 272 71.7
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 3.3e-104 382.5 386 56.5
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 5.7e-104 381.7 327 62.1
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.8e-103 379.4 332 59.6
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 6.3e-103 378.3 331 59.5
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.8e-102 376.7 337 62.3
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 2.4e-102 376.3 338 59.8
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 2.4e-102 376.3 333 60.4
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 3.1e-102 375.9 331 58.0
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 4.1e-102 375.6 284 68.0
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.3e-102 375.2 329 62.3
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.2e-101 374.0 246 79.3
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.5e-101 373.6 331 57.1
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.7e-100 370.2 331 60.1
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.7e-100 370.2 337 59.9
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 2.9e-100 369.4 327 61.8
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 3.8e-100 369.0 333 59.5
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 6.5e-100 368.2 326 60.7
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.4e-99 367.1 331 57.4
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.9e-99 366.7 339 58.7
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.9e-99 366.7 329 58.7
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 6.1e-98 361.7 336 58.3
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 7.9e-98 361.3 358 57.0
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.0e-97 360.9 331 56.8
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.8e-97 360.1 334 59.6
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.0e-97 359.4 331 59.5
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 5.1e-97 358.6 333 58.6
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 5.1e-97 358.6 333 57.4
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 8.2e-95 351.3 322 58.1
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 8.2e-95 351.3 339 54.6
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.4e-94 350.5 336 59.2
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 5.3e-94 348.6 335 58.5
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 6.9e-94 348.2 330 56.7
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.5e-93 347.1 330 59.1
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 3.4e-93 345.9 333 59.2
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 4.5e-93 345.5 335 54.3
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 2.9e-92 342.8 346 56.4
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 5.0e-92 342.0 339 54.0
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 8.5e-92 341.3 306 60.5
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.1e-90 336.7 340 55.6
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.1e-90 336.7 340 55.6
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.1e-90 336.7 340 55.6
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 4.6e-90 335.5 345 53.3
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 1.0e-89 334.3 335 55.5
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.4e-89 334.0 329 58.1
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.5e-88 330.5 252 68.7
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.7e-87 327.0 336 55.7
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.7e-87 327.0 321 55.5
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.7e-87 327.0 336 56.8
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.8e-86 323.6 330 53.9
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 2.4e-86 323.2 342 55.8
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 3.1e-86 322.8 380 51.6
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 3.1e-86 322.8 321 54.8
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 4.1e-86 322.4 271 61.3
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 9.1e-86 321.2 339 52.8
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 9.1e-86 321.2 339 52.8
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.2e-85 320.9 328 53.7
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.0e-84 317.8 338 53.3
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 2.9e-84 316.2 342 55.6
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 2.9e-84 316.2 322 53.1
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 6.5e-84 315.1 339 50.7
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 6.5e-84 315.1 329 51.7
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 8.5e-84 314.7 342 54.7
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.9e-83 313.5 342 54.7
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 3.2e-83 312.8 337 51.3
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 5.5e-83 312.0 325 54.5
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 9.4e-83 311.2 333 53.5
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 3.6e-82 309.3 334 54.5
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.6e-82 309.3 339 49.0
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 6.7e-81 305.1 339 48.1
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.5e-80 303.9 339 47.8
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.5e-80 303.9 330 53.6
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.6e-80 303.1 330 50.9
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.3e-79 300.8 327 51.1
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.7e-79 300.4 327 50.8
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 2.2e-79 300.1 371 50.4
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.4e-78 296.6 317 56.2
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.3e-78 295.4 332 52.7
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.9e-77 292.0 279 56.6
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.3e-76 290.8 245 59.2
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.5e-75 287.3 339 51.6
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.5e-75 287.3 213 68.5
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 4.4e-72 275.8 232 64.7
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 6.3e-71 271.9 295 52.2
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.1e-70 271.2 328 49.4
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 4.1e-70 269.2 307 51.5
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 7.7e-69 265.0 319 48.9
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 4.1e-62 242.7 217 65.9
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 7.0e-62 241.9 261 52.1
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.8e-60 236.1 172 73.3
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 7.5e-56 221.9 204 64.7
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.8e-55 219.9 204 64.7
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.4e-54 217.6 328 42.4
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.4e-54 216.9 204 60.8
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.4e-54 216.9 329 43.8
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 9.2e-54 214.9 175 59.4
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.0e-53 213.8 161 67.1
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 4.5e-53 212.6 164 60.4
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 4.5e-53 212.6 229 51.1
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.1e-51 208.0 329 41.6
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.2e-47 193.7 175 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 3.2e-46 189.9 228 46.1
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.2e-42 177.9 148 63.5
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 3.7e-39 166.4 129 58.1
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.4e-38 163.7 146 54.8
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 5.4e-38 162.5 203 50.7
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.5e-35 154.5 120 61.7
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 3.6e-34 149.8 210 45.2
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.0e-33 146.4 133 59.4
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.7e-31 141.0 144 53.5
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.4e-30 137.9 126 54.0
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.1e-22 111.7 97 59.8
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 4.6e-21 106.3 97 48.5
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 6.2e-18 95.9 220 32.3
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.7e-15 87.8 305 28.9
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.1e-14 85.1 90 51.1
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.2e-13 81.6 60 71.7
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.1e-13 80.9 52 73.1
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 8.7e-12 75.5 61 57.4
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 1.9e-11 74.3 231 31.2


User provided reference genes

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