Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 8.2e-49 196.8 105 100.0
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.5e-42 175.3 101 93.1
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 2.9e-30 135.2 100 76.0
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.9e-29 132.5 105 74.3
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 8.0e-28 127.1 86 79.1
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.1e-26 123.2 102 68.6
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.5e-26 122.9 92 75.0
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.5e-26 122.9 102 67.6
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 2.6e-26 122.1 99 70.7
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 3.3e-26 121.7 87 72.4
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 3.3e-26 121.7 87 72.4
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 9.7e-26 120.2 101 66.3
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 9.7e-26 120.2 102 67.6
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 2.2e-25 119.0 101 65.3
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 3.7e-25 118.2 91 70.3
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.4e-24 116.3 76 76.3
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.4e-24 116.3 103 64.1
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.4e-24 116.3 103 64.1
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.8e-24 115.9 95 66.3
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.8e-24 115.9 82 70.7
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 4.1e-24 114.8 78 75.6
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 4.1e-24 114.8 81 74.1
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 4.1e-24 114.8 78 76.9
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 5.3e-24 114.4 81 72.8
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.3e-24 114.4 81 72.8
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.3e-24 114.4 81 72.8
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.3e-24 114.4 81 72.8
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 5.3e-24 114.4 76 75.0
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 7.0e-24 114.0 78 75.6
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 9.1e-24 113.6 87 69.0
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.2e-23 113.2 81 72.8
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.2e-23 113.2 81 72.8
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 1.2e-23 113.2 89 70.8
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 1.2e-23 113.2 81 72.8
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.2e-23 113.2 82 69.5
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 1.6e-23 112.8 80 73.8
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.6e-23 112.8 81 72.8
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.6e-23 112.8 96 66.7
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 2.7e-23 112.1 91 70.3
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 3.5e-23 111.7 104 67.3
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 3.5e-23 111.7 95 63.2
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 3.5e-23 111.7 95 63.2
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 5.9e-23 110.9 101 65.3
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 5.9e-23 110.9 105 66.7
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 5.9e-23 110.9 80 68.8
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 7.7e-23 110.5 99 63.6
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 7.7e-23 110.5 78 73.1
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 7.7e-23 110.5 78 73.1
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 7.7e-23 110.5 78 73.1
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 7.7e-23 110.5 104 63.5
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 1.0e-22 110.2 98 65.3
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 1.3e-22 109.8 98 65.3
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.7e-22 109.4 95 60.0
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.7e-22 109.4 102 61.8
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.7e-22 109.4 102 61.8
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 2.9e-22 108.6 100 62.0
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 8.5e-22 107.1 82 67.1
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 8.5e-22 107.1 91 68.1
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 1.1e-21 106.7 79 69.6
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.1e-21 106.7 79 69.6
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 1.1e-21 106.7 81 67.9
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 2.5e-21 105.5 86 62.8
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 2.5e-21 105.5 93 60.2
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 2.5e-21 105.5 86 62.8
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 2.5e-21 105.5 99 62.6
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 3.2e-21 105.1 93 60.2
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 5.5e-21 104.4 86 61.6
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 5.5e-21 104.4 90 61.1
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 5.5e-21 104.4 93 59.1
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 7.2e-21 104.0 84 61.9
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 7.2e-21 104.0 86 61.6
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 7.2e-21 104.0 79 65.8
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.2e-20 103.2 104 59.6
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 1.2e-20 103.2 97 56.7
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.6e-20 102.8 93 59.1
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.1e-20 102.4 82 65.9
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 4.7e-20 101.3 80 66.2
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 4.7e-20 101.3 80 66.2
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 6.1e-20 100.9 80 66.2
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 8.0e-20 100.5 96 57.3
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.0e-19 98.6 82 62.2
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 3.0e-19 98.6 89 61.8
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 4.0e-19 98.2 82 64.6
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 4.0e-19 98.2 95 57.9
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 5.2e-19 97.8 75 64.0
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.5e-18 96.3 103 54.4
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.5e-18 96.3 89 59.6
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.5e-18 96.3 89 59.6
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.5e-18 96.3 89 59.6
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.0e-18 95.9 86 55.8
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 5.7e-18 94.4 82 62.2
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 5.7e-18 94.4 97 54.6
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 7.5e-18 94.0 97 59.8
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.7e-17 92.8 64 73.4
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 2.2e-17 92.4 79 55.7
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 2.8e-17 92.0 87 57.5
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 3.7e-17 91.7 93 57.0
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 4.8e-17 91.3 78 65.4
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.4e-16 89.7 88 56.8
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 1.4e-16 89.7 93 55.9
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.4e-16 89.7 88 56.8
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 3.1e-16 88.6 86 52.3
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 4.1e-16 88.2 88 55.7
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 4.1e-16 88.2 81 60.5
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 4.1e-16 88.2 80 63.8
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 5.4e-16 87.8 95 57.9
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 5.4e-16 87.8 70 64.3
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 3.8e-14 81.6 84 54.8
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.1e-13 80.1 119 45.4
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 4.2e-13 78.2 107 48.6
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.4e-11 73.2 115 41.7
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.4e-10 68.6 81 45.7
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 4.4e-10 68.2 89 43.8
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.3e-06 56.6 39 69.2
Peaxi162Scf00684g00584 Petunia axillaris HOM05D005892 ORTHO05D007364 2.9e-06 55.5 101 46.5
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 6.6e-06 54.3 82 45.1


User provided reference genes

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