Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 9.5e-142 506.9 269 100.0
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.1e-137 491.5 265 98.5
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 5.7e-70 268.5 264 64.8
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.2e-67 260.8 253 65.6
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.7e-66 256.9 268 61.9
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.8e-66 255.8 274 61.3
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 2.0e-62 243.4 256 64.5
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 1.3e-61 240.7 252 61.5
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 6.3e-61 238.4 254 64.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 6.3e-61 238.4 232 64.2
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.8e-60 236.9 240 64.2
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 2.4e-60 236.5 254 63.0
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 4.1e-60 235.7 252 63.1
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.1e-60 235.7 247 62.8
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 5.3e-60 235.3 245 63.3
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.2e-59 234.2 239 62.8
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.2e-59 234.2 242 63.6
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 1.5e-59 233.8 249 61.4
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.5e-59 233.8 239 62.8
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.5e-59 233.8 257 62.3
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 5.9e-59 231.9 260 59.2
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 7.7e-59 231.5 242 63.6
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 7.7e-59 231.5 239 62.3
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 1.0e-58 231.1 264 59.8
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.3e-58 230.7 251 61.8
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.3e-58 230.7 239 61.9
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.7e-58 230.3 255 60.4
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 2.2e-58 229.9 235 62.1
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 2.9e-58 229.6 268 58.6
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 6.5e-58 228.4 251 58.6
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 8.5e-58 228.0 261 60.5
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 8.5e-58 228.0 266 56.8
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.1e-57 227.6 256 56.6
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.4e-57 227.3 236 64.0
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.5e-57 226.5 243 62.1
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.5e-57 226.5 256 57.0
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.2e-57 226.1 259 61.4
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 5.5e-57 225.3 260 57.3
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 1.2e-56 224.2 268 55.2
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.2e-56 224.2 259 61.0
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 2.7e-56 223.0 279 55.6
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.7e-56 222.2 259 60.6
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 6.1e-56 221.9 269 55.4
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 6.1e-56 221.9 268 56.3
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.4e-55 220.7 251 56.2
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.4e-55 220.7 257 58.0
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.8e-55 220.3 251 55.8
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.8e-55 220.3 210 65.2
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 3.0e-55 219.5 263 59.7
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 3.9e-55 219.2 241 60.2
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 3.9e-55 219.2 236 61.4
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 5.2e-55 218.8 260 57.3
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 6.7e-55 218.4 250 58.0
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.1e-54 217.6 237 58.6
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.5e-54 217.2 241 59.8
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.5e-54 217.2 241 59.8
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.5e-54 217.2 251 55.4
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 5.7e-54 215.3 281 54.1
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 7.4e-54 214.9 236 60.6
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 9.7e-54 214.5 260 54.2
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 9.7e-54 214.5 261 57.5
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.7e-53 213.8 225 64.4
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 1.7e-53 213.8 253 54.9
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 3.7e-53 212.6 204 64.7
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 4.8e-53 212.2 204 63.7
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 1.8e-52 210.3 251 58.6
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 3.1e-52 209.5 259 55.6
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 7.0e-52 208.4 257 54.9
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.2e-51 207.6 247 59.9
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.0e-51 206.8 243 58.8
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.6e-51 206.5 259 55.2
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 2.6e-51 206.5 209 60.8
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.6e-51 206.5 252 54.4
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 2.6e-51 206.5 244 59.0
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 3.5e-51 206.1 260 53.8
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 3.5e-51 206.1 214 60.3
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 4.5e-51 205.7 251 53.0
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 4.5e-51 205.7 258 53.5
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.7e-51 204.9 263 53.2
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 7.7e-51 204.9 243 56.8
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.7e-50 203.8 220 59.1
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 5.0e-50 202.2 239 56.1
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 5.0e-50 202.2 221 58.8
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 6.5e-50 201.8 238 54.2
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.1e-49 201.1 234 55.1
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.5e-49 200.7 240 55.0
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 1.5e-49 200.7 257 54.5
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.5e-49 200.7 211 60.2
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 2.5e-49 199.9 233 57.1
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 7.2e-49 198.4 237 58.2
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 1.2e-48 197.6 261 53.6
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 3.6e-48 196.1 252 53.6
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.1e-48 195.3 251 54.6
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 8.0e-48 194.9 251 54.6
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 1.8e-47 193.7 216 57.4
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 5.2e-47 192.2 190 64.7
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 6.7e-47 191.8 288 48.6
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.5e-46 190.7 257 52.1
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.0e-46 190.3 251 53.8
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.6e-46 189.9 257 51.0
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 5.7e-46 188.7 267 52.1
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 7.5e-46 188.3 206 57.8
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 3.7e-45 186.0 269 49.1
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 4.8e-45 185.7 264 51.1
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 4.8e-45 185.7 264 51.1
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 4.8e-45 185.7 267 51.3
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.8e-45 185.7 263 51.7
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 6.3e-45 185.3 267 51.3
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 8.2e-45 184.9 256 46.1
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 1.4e-44 184.1 265 50.9
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.4e-44 184.1 241 53.1
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.8e-44 183.7 272 50.0
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 5.3e-44 182.2 271 49.8
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 5.3e-44 182.2 256 45.7
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 9.1e-44 181.4 271 49.4
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 3.5e-43 179.5 265 50.6
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 3.5e-43 179.5 265 50.6
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 4.5e-43 179.1 265 50.6
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 5.9e-43 178.7 265 50.6
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 7.7e-43 178.3 260 51.5
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.0e-42 177.9 265 49.4
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.3e-42 177.6 264 51.1
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 2.2e-42 176.8 203 55.7
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.8e-42 176.0 261 49.4
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 6.5e-42 175.3 259 49.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 8.5e-42 174.9 263 49.4
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 1.5e-41 174.1 243 50.6
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-40 171.0 249 49.8
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-40 171.0 249 49.8
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.6e-40 170.6 201 53.2
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.7e-40 169.1 255 50.2
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 4.7e-40 169.1 260 49.6
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 6.1e-40 168.7 248 47.2
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 8.0e-40 168.3 280 47.9
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.8e-39 167.2 250 46.4
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 1.2e-38 164.5 261 49.4
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 4.4e-38 162.5 264 48.1
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 9.8e-38 161.4 272 46.0
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 6.3e-37 158.7 253 45.5
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 1.4e-36 157.5 258 47.7
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 3.1e-36 156.4 245 46.5
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 7.0e-36 155.2 181 52.5
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 9.5e-33 144.8 205 51.2
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 9.5e-33 144.8 246 43.1
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 3.6e-32 142.9 205 51.2
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 2.7e-27 126.7 205 46.8
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 4.5e-27 125.9 215 44.2
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 4.5e-27 125.9 205 46.3
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 7.8e-27 125.2 102 72.5
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 7.8e-27 125.2 189 45.0
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.0e-26 124.8 189 45.0
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.7e-26 124.0 204 46.1
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 2.3e-26 123.6 204 46.1
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.9e-26 123.2 104 72.1
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 6.6e-26 122.1 183 47.5
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 2.1e-24 117.1 235 40.4
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 2.6e-22 110.2 159 48.4
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 3.5e-19 99.8 179 43.6
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 3.0e-18 96.7 68 70.6
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 4.7e-16 89.4 164 41.5
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 2.9e-13 80.1 93 49.5
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 4.1e-12 76.3 66 75.8


User provided reference genes

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