Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 2249.9 1159 100.0
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1784.2 1176 78.8
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1762.3 1090 81.6
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1680.2 1200 73.5
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1591.2 1358 64.1
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1510.4 792 97.2
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 1507.7 1037 74.0
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 1496.9 1157 68.1
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 1492.2 1159 67.5
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 1476.1 1049 71.3
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1466.1 1185 64.5
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 1460.3 1162 65.7
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1460.3 1159 65.1
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 1453.0 1166 65.2
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1448.0 1105 68.8
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1437.9 1178 64.3
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 1435.2 1048 70.1
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 1423.7 1088 67.0
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 1411.4 1160 64.1
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1407.1 1166 63.7
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 1406.7 1091 67.1
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 1403.3 1097 66.6
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1401.0 1047 68.6
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1398.3 1110 66.3
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 1397.5 1092 65.4
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1395.6 1214 63.3
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 1392.9 1163 63.4
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 1392.5 1085 66.1
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 1391.7 1156 64.1
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1373.2 1084 65.8
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 1363.6 1049 66.2
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1356.7 1046 66.1
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1356.3 1081 65.8
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1347.8 1091 64.0
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1345.5 1156 61.7
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1342.8 1084 64.5
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1339.7 1158 61.8
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1331.2 1064 64.2
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1330.5 1157 61.0
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1327.4 1161 61.2
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1325.5 1093 63.2
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1324.7 1101 63.0
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1324.7 1088 63.9
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1323.1 1156 61.2
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1321.2 1164 61.2
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1318.9 1163 59.8
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1316.6 1175 60.5
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1315.8 1168 61.1
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1313.9 1115 62.9
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1312.0 1095 63.0
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1311.6 1113 62.4
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1306.2 1090 62.7
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1304.3 1097 63.4
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1302.3 1028 65.2
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1298.1 1100 62.9
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1295.8 1094 62.7
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1294.6 1043 64.3
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1291.6 1085 62.9
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1289.6 1096 62.8
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1275.0 1086 61.5
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1274.6 1170 59.7
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1271.5 1086 62.8
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1270.8 1164 60.0
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1266.9 1171 59.0
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1265.4 1162 58.9
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1252.7 1188 58.2
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1251.1 1058 62.7
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1247.3 1101 60.3
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1237.2 798 82.5
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1231.5 1090 60.2
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1219.5 1210 55.6
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1216.8 1058 61.2
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1210.7 1044 62.1
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1204.1 1045 61.5
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1204.1 1028 61.6
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1195.6 1041 61.2
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1192.2 1044 60.6
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1184.9 1043 60.2
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1177.9 1052 59.5
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1171.0 1058 58.7
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1170.6 1069 58.7
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1165.2 1058 58.7
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1157.5 1075 57.8
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1147.1 1062 58.2
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1139.0 1037 58.5
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1134.4 1140 54.0
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 1.7e-309 1066.2 1089 54.1
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 1.0e-264 917.5 859 56.3
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 2.2e-259 899.8 687 68.3
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 2.6e-244 849.7 723 64.0
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 1.5e-236 823.9 711 61.9
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 4.3e-231 805.8 1150 42.8
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 5.2e-229 798.9 1188 41.8
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 3.9e-224 782.7 1166 40.6
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 6.2e-222 775.4 1060 42.5
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 3.3e-207 726.5 1144 38.8
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 3.3e-183 646.7 993 39.9
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 1.3e-166 591.7 560 59.1
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 1.4e-162 578.2 493 63.5
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.7e-150 538.1 557 54.9
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 3.7e-150 537.0 498 57.8
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 9.4e-138 495.7 358 69.0
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.4e-117 428.7 217 98.2
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 7.6e-71 273.5 227 65.6
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 7.6e-71 273.5 224 63.8
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 2.0e-63 248.8 273 50.9
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 5.5e-61 240.7 310 46.1
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 3.6e-36 158.3 239 44.4
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.3e-34 151.8 141 57.4
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 7.2e-21 107.5 487 25.5
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 4.7e-20 104.8 120 51.7
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 1.1e-16 93.6 139 41.7
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 7.0e-16 90.9 68 61.8
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 5.9e-15 87.8 83 59.0
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.5e-10 73.2 76 50.0
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 2.2e-09 69.3 65 46.2
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 9.1e-08 63.9 44 63.6


User provided reference genes

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