Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000086 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D013255 1.2e-52 209.5 100 100.0
CSS0009184 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D013255 1.1e-50 203.0 100 97.0
CSS0025386 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 3.4e-36 154.8 152 56.6
CSS0000612 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D013255 9.2e-34 146.7 96 79.2
CSS0037480 Camellia sinensis var. sinensis HOM05D011226 ORTHO05D014017 7.1e-26 120.6 93 66.7
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.6e-20 102.1 148 40.5
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 2.9e-19 98.6 147 40.8
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 6.4e-19 97.4 147 40.1
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 3.2e-18 95.1 147 38.8
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 7.1e-18 94.0 149 39.6
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.7e-17 92.0 148 39.9
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 3.5e-17 91.7 142 38.7
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 4.6e-17 91.3 147 37.4
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 6.0e-17 90.9 157 36.9
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 1.3e-16 89.7 142 38.0
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 2.3e-16 89.0 150 38.7
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 3.0e-16 88.6 146 37.7
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 3.0e-16 88.6 146 37.7
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 3.9e-16 88.2 144 37.5
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 3.9e-16 88.2 147 36.7
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 3.9e-16 88.2 146 37.7
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 3.9e-16 88.2 146 37.0
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 3.9e-16 88.2 146 37.7
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 5.1e-16 87.8 147 37.4
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 5.1e-16 87.8 147 38.1
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 6.7e-16 87.4 147 36.7
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 6.7e-16 87.4 143 37.8
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 6.7e-16 87.4 143 37.8
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 6.7e-16 87.4 147 36.7
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 6.7e-16 87.4 147 36.7
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 6.7e-16 87.4 147 38.1
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 1.1e-15 86.7 147 37.4
Nitab4.5_0000355g0160 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.1e-15 86.7 147 36.1
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 1.1e-15 86.7 143 37.1
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 1.5e-15 86.3 143 37.1
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 1.5e-15 86.3 146 37.7
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.5e-15 86.3 146 35.6
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 1.5e-15 86.3 147 35.4
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 1.5e-15 86.3 147 35.4
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.9e-15 85.9 143 37.1
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 2.5e-15 85.5 142 37.3
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 2.5e-15 85.5 142 37.3
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 2.5e-15 85.5 147 36.7
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.5e-15 85.5 147 36.1
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 2.5e-15 85.5 147 37.4
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 2.5e-15 85.5 146 36.3
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 2.5e-15 85.5 151 35.1
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.5e-15 85.5 146 37.0
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 3.3e-15 85.1 144 36.8
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 3.3e-15 85.1 146 37.0
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 3.3e-15 85.1 153 36.6
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 3.3e-15 85.1 140 36.4
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 3.3e-15 85.1 145 36.6
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 4.3e-15 84.7 144 36.8
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 4.3e-15 84.7 146 37.0
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 4.3e-15 84.7 146 36.3
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 4.3e-15 84.7 146 35.6
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 4.3e-15 84.7 146 35.6
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 5.6e-15 84.3 152 34.9
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 5.6e-15 84.3 152 34.9
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 5.6e-15 84.3 147 35.4
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 5.6e-15 84.3 146 37.0
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 5.6e-15 84.3 145 36.6
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 7.4e-15 84.0 150 35.3
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 7.4e-15 84.0 145 35.9
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 9.6e-15 83.6 147 35.4
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 9.6e-15 83.6 147 36.7
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 9.6e-15 83.6 147 36.7
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 9.6e-15 83.6 146 36.3
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 9.6e-15 83.6 146 37.0
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 1.3e-14 83.2 147 37.4
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 1.3e-14 83.2 154 35.1
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 1.3e-14 83.2 149 34.2
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 1.3e-14 83.2 144 36.8
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 1.6e-14 82.8 49 77.6
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 1.6e-14 82.8 147 36.7
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 1.6e-14 82.8 144 35.4
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 2.1e-14 82.4 147 35.4
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.1e-14 82.4 149 34.2
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 2.1e-14 82.4 144 35.4
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 2.8e-14 82.0 158 34.2
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 4.8e-14 81.3 146 34.2
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 4.8e-14 81.3 146 35.6
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 6.2e-14 80.9 158 32.9
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 6.2e-14 80.9 51 72.5
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.2e-14 80.9 51 72.5
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 6.2e-14 80.9 146 37.7
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 8.1e-14 80.5 147 35.4
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 8.1e-14 80.5 140 36.4
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 1.1e-13 80.1 55 69.1
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 1.1e-13 80.1 146 34.9
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.1e-13 80.1 147 36.1
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.1e-13 80.1 147 36.1
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 1.1e-13 80.1 146 34.2
SEGI_27011 Sequoiadendron giganteum HOM05D002560 ORTHO05D003782 1.1e-13 80.1 149 34.2
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.1e-13 80.1 146 34.2
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.4e-13 79.7 146 34.2
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 1.8e-13 79.3 146 34.9
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 2.4e-13 79.0 49 75.5
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 2.4e-13 79.0 146 33.6
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 3.1e-13 78.6 55 70.9
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 3.1e-13 78.6 146 34.9
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 3.1e-13 78.6 68 57.4
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 3.1e-13 78.6 51 70.6
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 3.1e-13 78.6 51 70.6
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 3.1e-13 78.6 51 70.6
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 3.1e-13 78.6 147 34.7
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 3.1e-13 78.6 49 77.6
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 3.1e-13 78.6 146 34.2
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 4.0e-13 78.2 143 35.0
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 4.0e-13 78.2 49 75.5
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 4.0e-13 78.2 146 34.9
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 5.3e-13 77.8 143 35.7
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 5.3e-13 77.8 49 75.5
Haze_21119 Corylus avellana HOM05D002560 ORTHO05D003782 5.3e-13 77.8 46 76.1
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 5.3e-13 77.8 146 33.6
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 33.6
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 33.6
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 33.6
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 33.6
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 6.9e-13 77.4 46 76.1
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 6.9e-13 77.4 153 33.3
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 33.6
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 6.9e-13 77.4 49 71.4
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 33.6
Solyc10g076260.2 Solanum lycopersicum HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 34.2
Gohir.A06G201901 Gossypium hirsutum HOM05D002560 ORTHO05D003782 9.0e-13 77.0 57 64.9
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 9.0e-13 77.0 51 74.5
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 9.0e-13 77.0 51 74.5
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 9.0e-13 77.0 51 74.5
Lalb_Chr01g0023601 Lupinus albus HOM05D002560 ORTHO05D003782 9.0e-13 77.0 45 77.8
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 9.0e-13 77.0 49 71.4
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.2e-12 76.6 55 69.1
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.2e-12 76.6 55 69.1
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 1.2e-12 76.6 53 67.9
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.2e-12 76.6 54 72.2
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 1.2e-12 76.6 146 33.6
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.2e-12 76.6 52 71.2
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 1.5e-12 76.3 146 32.9
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 1.5e-12 76.3 146 32.9
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 1.5e-12 76.3 146 32.9
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 1.5e-12 76.3 146 32.9
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 1.5e-12 76.3 146 32.9
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.5e-12 76.3 51 66.7
CAN.G84.41 Capsicum annuum HOM05D002560 ORTHO05D000293 2.0e-12 75.9 56 64.3
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 2.0e-12 75.9 46 71.7
Lj2C63G9 Lonicera japonica HOM05D002560 ORTHO05D003782 2.6e-12 75.5 44 79.5
CBR_g54867 Chara braunii HOM05D002560 ORTHO05D003782 3.4e-12 75.1 50 68.0
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 3.4e-12 75.1 156 31.4
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 4.5e-12 74.7 46 71.7
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 5.8e-12 74.3 55 63.6
Ah.15g090290 Amaranthus hybridus HOM05D002560 ORTHO05D003782 5.8e-12 74.3 45 73.3
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 5.8e-12 74.3 68 55.9
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 5.8e-12 74.3 68 55.9
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 5.8e-12 74.3 68 55.9
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 5.8e-12 74.3 68 55.9
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 5.8e-12 74.3 68 55.9
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 7.6e-12 73.9 44 77.3
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.0e-11 73.6 46 71.7
Lsat_1_v5_gn_7_100020 Lactuca sativa HOM05D002560 ORTHO05D013255 1.0e-11 73.6 84 47.6
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 1.0e-11 73.6 46 69.6
Eucgr.K01257 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.3e-11 73.2 46 69.6
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 1.7e-11 72.8 67 52.2
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.7e-11 72.8 48 68.8
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.9e-11 72.0 59 62.7
Gohir.A05G397550 Gossypium hirsutum HOM05D002560 ORTHO05D003782 3.8e-11 71.6 56 64.3
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 6.5e-11 70.9 48 64.6
PRCOL_00002325 Prasinoderma coloniale HOM05D002560 ORTHO05D003782 1.1e-10 70.1 160 31.9
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.9e-10 69.3 43 72.1
Lsat_1_v5_gn_2_30201 Lactuca sativa HOM05D002560 ORTHO05D013255 4.2e-10 68.2 92 43.5
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 9.3e-10 67.0 140 31.4
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 2.7e-09 65.5 149 33.6
COL.COLO4_08634 Corchorus olitorius HOM05D002560 ORTHO05D003782 3.5e-09 65.1 92 42.4
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.3e-08 62.4 148 30.4
Haze_26280 Corylus avellana HOM05D002560 ORTHO05D003782 8.7e-08 60.5 41 58.5
Cre08.g371957 Chlamydomonas reinhardtii HOM05D002560 ORTHO05D003782 1.5e-07 59.7 48 56.2
Cfa024140 Carpinus fangiana HOM05D002560 ORTHO05D003782 1.9e-07 59.3 49 51.0
Lsat_1_v5_gn_7_54181 Lactuca sativa HOM05D002560 ORTHO05D003085 9.6e-07 57.0 51 58.8


User provided reference genes

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