Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 0.0e+00 1364.4 720 100.0
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 0.0e+00 1143.6 721 84.0
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 0.0e+00 1102.0 721 81.6
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 8.6e-307 1056.6 722 77.3
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 1.2e-300 1036.2 722 77.4
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 1.5e-298 1029.2 721 74.8
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 1.3e-294 1016.1 731 76.1
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 1.3e-294 1016.1 723 75.2
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 6.4e-294 1013.8 943 63.1
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 1.0e-291 1006.5 726 75.2
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 5.6e-290 1000.7 721 72.8
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 1.4e-288 996.1 722 73.0
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 2.3e-288 995.3 729 74.8
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 6.8e-288 993.8 733 74.6
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 5.8e-287 990.7 722 72.4
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 1.3e-286 989.6 736 72.8
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 2.9e-286 988.4 721 74.1
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 3.8e-286 988.0 723 72.9
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 1.9e-285 985.7 723 72.3
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 5.4e-285 984.2 720 74.0
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 1.6e-284 982.6 724 73.1
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 3.5e-284 981.5 724 72.8
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 1.7e-283 979.2 720 71.9
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 2.3e-283 978.8 722 72.4
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 1.1e-282 976.5 730 74.1
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 2.5e-282 975.3 720 71.7
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 4.3e-282 974.5 726 75.2
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 8.1e-281 970.3 723 73.4
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 1.4e-280 969.5 929 61.2
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 3.1e-280 968.4 723 71.0
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 1.4e-277 959.5 722 72.9
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 1.9e-277 959.1 723 70.5
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 2.7e-276 955.3 733 72.2
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.0e-275 953.4 721 71.8
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 3.0e-275 951.8 721 72.0
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 6.6e-275 950.7 721 72.0
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 8.7e-275 950.3 728 72.1
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.5e-274 949.5 721 71.8
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.5e-274 949.5 721 71.4
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.9e-274 949.1 721 71.4
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 2.5e-274 948.7 730 72.2
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 8.1e-273 943.7 723 71.1
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 1.9e-269 932.6 727 70.8
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 3.2e-269 931.8 722 69.8
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 4.2e-269 931.4 725 69.8
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 5.4e-269 931.0 723 69.8
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 7.1e-269 930.6 723 69.8
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 9.3e-269 930.2 722 70.2
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 9.6e-266 920.2 636 76.9
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 4.0e-264 914.8 720 68.6
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 9.9e-263 910.2 802 64.3
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 7.1e-261 904.0 734 68.3
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 1.2e-260 903.3 723 69.6
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 4.6e-260 901.4 723 69.0
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 9.6e-258 893.6 723 67.9
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 3.7e-257 891.7 723 68.0
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 8.2e-257 890.6 723 68.3
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 1.4e-256 889.8 724 67.5
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 2.4e-256 889.0 735 67.8
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.4e-256 889.0 723 67.9
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 3.4e-255 885.2 729 67.6
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 7.6e-255 884.0 722 66.9
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 8.4e-254 880.6 724 65.2
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 2.5e-253 879.0 728 65.8
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 4.2e-253 878.2 726 68.0
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 1.1e-250 870.2 722 68.1
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 1.9e-250 869.4 726 68.2
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 9.7e-250 867.1 724 64.2
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 2.1e-249 865.9 735 66.8
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 2.4e-248 862.4 757 64.5
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 7.2e-245 850.9 722 64.8
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 1.6e-244 849.7 730 64.7
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 6.1e-244 847.8 711 66.7
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 7.9e-244 847.4 728 66.2
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 1.3e-241 840.1 731 65.4
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 2.2e-241 839.3 594 75.1
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 1.0e-238 830.5 723 65.3
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 3.8e-238 828.6 719 65.4
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 1.3e-230 803.5 725 61.8
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 4.2e-229 798.5 730 59.5
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 7.9e-228 794.3 726 63.8
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 2.3e-227 792.7 720 62.9
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 1.7e-225 786.6 775 58.3
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 6.3e-225 784.6 728 59.3
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 2.2e-222 776.2 733 59.8
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 2.3e-219 766.1 591 70.2
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 5.2e-219 765.0 583 74.8
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 7.5e-218 761.1 727 58.0
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 1.3e-217 760.4 727 57.9
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 1.8e-216 756.5 733 58.9
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 2.4e-216 756.1 727 57.6
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 3.1e-216 755.7 728 57.8
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 5.3e-216 755.0 625 65.3
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 1.5e-213 746.9 730 57.5
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 7.2e-213 744.6 751 58.5
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 1.6e-212 743.4 751 55.8
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.0e-211 740.7 620 64.5
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 6.3e-209 731.5 555 71.7
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 2.5e-205 719.5 730 57.8
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 2.8e-204 716.1 733 56.6
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 9.5e-197 691.0 719 56.2
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 1.7e-193 680.2 538 67.8
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 4.1e-184 649.0 600 62.7
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 3.8e-169 599.4 602 55.6
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 2.8e-156 556.6 523 60.4
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 2.1e-135 487.3 775 41.4
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 1.6e-132 477.6 803 40.0
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 2.2e-121 440.7 467 57.2
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 1.6e-111 407.9 723 38.0
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 2.2e-105 387.5 298 70.5
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 8.3e-100 369.0 272 70.6
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 2.5e-96 357.5 449 49.9
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 3.3e-88 330.5 313 61.7
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 2.8e-84 317.4 367 51.2
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 5.8e-77 293.1 434 44.0
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 4.3e-64 250.4 290 52.1
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 4.4e-61 240.4 192 67.2
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 1.9e-59 235.0 181 65.7
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 4.6e-50 203.8 155 77.4
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 3.6e-47 194.1 154 64.9
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 2.7e-42 177.9 129 81.4
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 8.7e-41 172.9 144 63.9
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 1.9e-40 171.8 133 75.9
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 3.6e-39 167.5 97 86.6
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 6.4e-36 156.8 128 71.1
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 4.2e-35 154.1 107 77.6
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 2.4e-30 138.3 157 53.5
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 9.6e-24 116.3 114 56.1
CAN.G363.39 Capsicum annuum HOM05D005929 ORTHO05D007869 5.9e-13 80.5 129 41.9
Lsat_1_v5_gn_2_40080 Lactuca sativa HOM05D005929 ORTHO05D029973 1.6e-10 72.4 122 41.0
Cre01.g029050 Chlamydomonas reinhardtii HOM05D003178 ORTHO05D003636 1.1e-06 59.7 137 32.8


User provided reference genes

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