Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.8e-72 275.8 140 100.0
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.1e-64 248.1 152 86.2
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.0e-64 247.3 152 84.9
CSS0023048 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.7e-55 218.8 140 83.6
CSS0048373 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.9e-48 196.1 160 68.1
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.7e-38 162.9 150 54.0
CSS0016507 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.8e-36 154.8 140 56.4
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.0e-30 137.1 147 47.6
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-25 120.2 140 43.6
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.1e-24 117.1 140 45.0
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.2e-23 113.6 150 41.3
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-22 109.8 146 39.0
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.0e-22 109.0 150 40.0
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.5e-21 106.7 148 39.9
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.5e-21 106.7 148 39.2
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-21 106.7 148 39.9
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.9e-21 106.3 148 39.9
CSS0000654 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.4e-21 104.4 148 39.9
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 7.4e-21 104.4 151 39.7
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 8.1e-20 100.9 151 39.1
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.1e-19 100.5 147 41.5
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.1e-19 100.5 147 40.1
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.8e-19 99.8 95 49.5
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.1e-19 99.0 145 36.6
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 3.1e-19 99.0 149 37.6
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 6.9e-19 97.8 145 38.6
CSS0036610 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 2.6e-18 95.9 146 36.3
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.6e-18 95.9 147 36.7
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 3.4e-18 95.5 144 41.0
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.6e-18 94.4 140 37.9
Rhsim03G0019700 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.3e-17 93.6 148 36.5
Rhsim03G0019800 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.3e-17 93.6 148 36.5
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.3e-17 93.6 121 40.5
vmacro21152 Vaccinium macrocarpon HOM05D003664 ORTHO05D003077 1.3e-17 93.6 144 36.1
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.9e-17 92.4 148 36.5
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 3.8e-17 92.0 130 34.6
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 4.9e-17 91.7 140 36.4
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-16 89.7 94 42.6
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 1.9e-16 89.7 140 35.7
CSS0034453 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.2e-16 88.6 132 35.6
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.2e-16 88.6 139 36.0
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.5e-16 88.2 145 34.5
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 2.1e-15 86.3 119 39.5
Lj2C65T12 Lonicera japonica HOM05D008183 ORTHO05D007254 2.7e-15 85.9 141 34.8
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 7.9e-15 84.3 97 41.2
Lju110C5T8 Lonicera japonica HOM05D008183 ORTHO05D007254 1.0e-14 84.0 141 36.9
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.0e-14 84.0 128 36.7
CSS0019282 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.9e-14 82.0 100 41.0
CSS0037115 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.9e-14 82.0 122 35.2
Lj1P289T15 Lonicera japonica HOM05D008183 ORTHO05D007254 1.9e-13 79.7 135 34.1
Lj3P1014T21 Lonicera japonica HOM05D008183 ORTHO05D007254 4.3e-13 78.6 128 34.4
CSS0014976 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.6e-13 77.4 131 37.4
Rhsim03G0007600 Rhododendron simsii HOM05D033359 ORTHO05D007254 1.3e-12 77.0 133 32.3
CSS0034752 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 1.6e-12 76.6 136 36.0
Lj1P1006T30 Lonicera japonica HOM05D008183 ORTHO05D007254 3.7e-12 75.5 130 33.8
COL.COLO4_28797 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.8e-12 75.1 146 33.6
Lj3P354T13 Lonicera japonica HOM05D008183 ORTHO05D007254 6.3e-12 74.7 91 44.0
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 1.4e-11 73.6 150 31.3
Lj3P854T34 Lonicera japonica HOM05D008183 ORTHO05D007254 4.1e-11 72.0 90 42.2
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.3e-11 71.6 95 38.9
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 6.9e-11 71.2 86 40.7
CSS0040440 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 1.5e-10 70.1 97 40.2
CSS0029699 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 2.6e-10 69.3 97 41.2
Lj2P257T35 Lonicera japonica HOM05D008183 ORTHO05D007254 4.5e-10 68.6 92 38.0
Lj4C77T3 Lonicera japonica HOM05D008183 ORTHO05D007254 4.5e-10 68.6 127 33.1
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 7.6e-10 67.8 83 41.0
CSS0049610 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 1.0e-09 67.4 97 40.2
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 1.0e-09 67.4 152 30.3
Lj8P205T42 Lonicera japonica HOM05D008183 ORTHO05D007254 1.7e-09 66.6 94 37.2
Rhsim12G0201300 Rhododendron simsii HOM05D002908 ORTHO05D009379 1.7e-09 66.6 87 41.4
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.2e-09 66.2 148 30.4
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 2.9e-09 65.9 150 32.0
vmacro05982 Vaccinium macrocarpon HOM05D002315 ORTHO05D002416 2.9e-09 65.9 94 34.0
vmacro06821 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 2.9e-09 65.9 113 36.3
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 3.8e-09 65.5 130 35.4
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 6.5e-09 64.7 150 27.3
COL.COLO4_30449 Corchorus olitorius HOM05D001332 ORTHO05D007191 8.5e-09 64.3 147 26.5
Gorai.004G068400 Gossypium raimondii HOM05D008183 ORTHO05D007254 8.5e-09 64.3 138 29.7
Atru.chr9.1010 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-08 63.9 149 28.9
FvH4_1g29601 Fragaria vesca HOM05D000003 ORTHO05D000004 1.1e-08 63.9 150 26.0
CSS0002638 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 1.4e-08 63.5 89 43.8
CSS0025139 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 1.4e-08 63.5 89 43.8
COL.COLO4_35386 Corchorus olitorius HOM05D008133 ORTHO05D009449 1.4e-08 63.5 144 28.5
CSS0006002 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-08 63.2 97 35.1
CSS0036848 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 1.9e-08 63.2 84 40.5
Lj3g0002323 Lotus japonicus HOM05D000003 ORTHO05D007254 2.5e-08 62.8 138 29.0
Sc05g0006150 Simmondsia chinensis HOM05D013236 ORTHO05D007254 2.5e-08 62.8 126 32.5
FvH4_3g43651 Fragaria vesca HOM05D008133 ORTHO05D009449 3.2e-08 62.4 150 27.3
Lj1g0015022 Lotus japonicus HOM05D000003 ORTHO05D000167 5.5e-08 61.6 149 28.9
Lj3C625T2 Lonicera japonica HOM05D008183 ORTHO05D007254 7.2e-08 61.2 84 38.1
Lj7P396T52 Lonicera japonica HOM05D008183 ORTHO05D007254 7.2e-08 61.2 100 34.0
Rhsim01G0039500 Rhododendron simsii HOM05D000003 ORTHO05D007254 7.2e-08 61.2 137 31.4
COL.COLO4_36557 Corchorus olitorius HOM05D000003 ORTHO05D000126 9.3e-08 60.8 97 33.0
RcHm_v2.0_Chr7g0223051 Rosa chinensis HOM05D000003 ORTHO05D009449 1.2e-07 60.5 149 30.2
Prupe.1G073500 Prunus persica HOM05D008133 ORTHO05D007254 2.1e-07 59.7 121 29.8
COL.COLO4_35238 Corchorus olitorius HOM05D008133 ORTHO05D009449 2.7e-07 59.3 136 29.4
COL.COLO4_36554 Corchorus olitorius HOM05D000003 ORTHO05D015627 2.7e-07 59.3 75 37.3
COL.COLO4_17181 Corchorus olitorius HOM05D008183 ORTHO05D007254 3.6e-07 58.9 124 29.8
FvH4_6g16031 Fragaria vesca HOM05D000003 ORTHO05D009449 6.1e-07 58.2 148 30.4
FvH4_6g30670 Fragaria vesca HOM05D021529 ORTHO05D009449 6.1e-07 58.2 148 29.7
Haze_05932 Corylus avellana HOM05D009031 ORTHO05D000167 7.9e-07 57.8 152 27.6
vmacro01918 Vaccinium macrocarpon HOM05D008183 ORTHO05D007254 7.9e-07 57.8 71 43.7
CSS0013596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 1.0e-06 57.4 43 62.8
Sc19g0003070 Simmondsia chinensis HOM05D013236 ORTHO05D007254 1.0e-06 57.4 84 35.7
FvH4_1g18911 Fragaria vesca HOM05D009322 ORTHO05D010713 1.3e-06 57.0 146 30.1
RcHm_v2.0_Chr2g0115441 Rosa chinensis HOM05D008133 ORTHO05D009449 1.3e-06 57.0 150 28.0
COL.COLO4_30555 Corchorus olitorius HOM05D000003 ORTHO05D000167 1.8e-06 56.6 138 27.5
Rhsim03G0007500 Rhododendron simsii HOM05D033359 ORTHO05D340347 2.3e-06 56.2 98 31.6
FvH4_4g25931 Fragaria vesca HOM05D011624 ORTHO05D014221 5.1e-06 55.1 145 26.2
PSO339G5198 Papaver somniferum HOM05D000155 ORTHO05D000022 5.1e-06 55.1 141 24.1
Prupe.1G202000 Prunus persica HOM05D000003 ORTHO05D000004 5.1e-06 55.1 143 25.9
FvH4_5g26254 Fragaria vesca HOM05D011824 ORTHO05D009449 6.7e-06 54.7 149 26.2
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 8.7e-06 54.3 151 27.8


User provided reference genes

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