Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 0.0e+00 1086.2 553 100.0
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 1.1e-264 916.4 553 84.6
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 7.9e-260 900.2 553 83.5
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 7.4e-258 893.6 556 83.6
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 4.6e-252 874.4 559 82.6
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 9.7e-250 866.7 518 86.9
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 6.3e-249 864.0 606 75.9
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.7e-241 839.3 553 77.8
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 5.0e-238 827.8 553 77.8
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 2.3e-235 818.9 554 76.2
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 5.2e-235 817.8 556 77.9
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 8.8e-235 817.0 566 76.3
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 2.8e-233 812.0 553 75.2
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 3.7e-233 811.6 560 76.2
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 4.8e-233 811.2 556 76.8
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 4.8e-233 811.2 552 75.4
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 2.4e-232 808.9 555 76.6
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 9.1e-232 807.0 556 76.4
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.6e-231 806.2 556 75.5
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 2.0e-231 805.8 554 74.9
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.5e-229 798.9 557 74.7
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 4.7e-228 794.7 559 73.9
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 6.1e-228 794.3 555 73.9
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.0e-227 793.5 553 75.9
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.8e-227 792.7 553 76.3
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 2.4e-224 782.3 559 74.2
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 2.0e-223 779.2 553 72.3
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 7.7e-223 777.3 553 72.2
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.0e-222 776.9 554 74.4
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.3e-222 776.5 555 73.7
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 4.2e-221 771.5 553 72.2
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 3.6e-220 768.5 553 71.4
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 3.0e-219 765.4 554 71.8
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 4.0e-219 765.0 559 72.8
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 5.7e-218 761.1 561 70.9
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 7.5e-218 760.8 555 71.2
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 9.8e-218 760.4 555 71.4
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 8.3e-217 757.3 560 71.1
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 2.4e-216 755.7 553 72.0
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.0e-214 750.4 551 70.2
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 9.5e-213 743.8 560 71.6
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.6e-212 743.0 559 70.3
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 2.6e-210 735.7 614 67.3
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 3.4e-210 735.3 637 64.8
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 9.8e-210 733.8 552 68.5
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 5.4e-208 728.0 570 67.2
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.3e-206 723.4 556 69.8
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 1.7e-206 723.0 558 71.7
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 3.9e-206 721.8 556 70.1
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 5.0e-206 721.5 552 67.8
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 5.0e-206 721.5 552 67.9
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 3.6e-204 715.3 566 68.0
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 4.7e-204 714.9 561 69.0
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 1.4e-203 713.4 555 69.2
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.3e-203 712.6 554 70.6
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 3.1e-203 712.2 556 69.6
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 3.4e-202 708.8 566 67.5
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 4.4e-202 708.4 552 66.7
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 7.5e-202 707.6 558 69.7
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.3e-201 706.8 559 67.1
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 2.2e-201 706.1 538 72.5
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 3.7e-201 705.3 555 66.8
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 5.4e-200 701.4 553 70.5
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 6.0e-199 698.0 552 70.5
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 7.8e-199 697.6 556 70.9
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 2.3e-198 696.0 554 68.6
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 8.6e-198 694.1 694 57.3
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.5e-194 683.3 589 63.5
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.6e-194 682.6 693 57.3
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 4.4e-194 681.8 560 68.2
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 4.4e-194 681.8 554 67.7
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.3e-193 680.2 542 69.2
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.4e-192 676.8 579 64.4
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 3.2e-192 675.6 538 66.9
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 4.1e-192 675.2 579 64.4
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 2.3e-190 669.5 563 66.6
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.1e-189 667.2 468 73.5
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 1.1e-187 660.6 571 65.7
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 4.4e-186 655.2 583 61.2
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.9e-185 651.7 468 69.0
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.9e-184 649.8 573 63.9
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.0e-182 644.0 638 57.4
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 1.3e-182 643.7 566 64.0
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.5e-181 640.2 529 66.5
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 6.8e-179 631.3 564 64.4
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 5.8e-178 628.2 451 72.7
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 2.9e-177 625.9 570 64.4
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 1.2e-175 620.5 577 62.6
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.2e-175 620.5 573 61.8
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 3.5e-175 619.0 571 63.0
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 1.3e-174 617.1 572 62.4
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 5.1e-174 615.1 569 61.9
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.1e-173 614.0 575 63.1
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 9.6e-173 610.9 571 61.5
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 8.1e-172 607.8 574 61.5
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.9e-168 596.7 574 60.8
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.6e-164 583.6 533 61.7
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 2.4e-163 579.7 561 58.6
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.5e-162 577.0 560 59.3
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.7e-161 573.5 558 60.2
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 1.5e-157 560.5 577 59.6
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 2.5e-157 559.7 577 59.6
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 2.5e-157 559.7 577 59.6
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 3.7e-156 555.8 581 57.7
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 1.8e-155 553.5 581 57.5
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 3.4e-154 549.3 432 70.4
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 3.1e-147 526.2 577 54.9
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 1.9e-144 516.9 419 67.8
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 2.5e-141 506.5 583 52.1
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.0e-134 484.6 564 51.6
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.3e-132 477.6 564 51.8
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.6e-127 460.7 556 50.0
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 3.6e-127 459.5 392 64.8
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.5e-125 454.1 558 51.3
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 9.8e-101 371.7 389 57.1
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 2.7e-98 363.6 565 43.5
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 2.9e-97 360.1 568 41.7
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 3.0e-89 333.6 500 43.4
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 8.9e-86 322.0 312 59.3
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.8e-79 300.4 360 49.2
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 5.6e-56 223.0 265 45.7
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 9.0e-54 215.7 470 36.4
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.8e-38 164.9 158 58.9
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 1.4e-30 138.7 89 79.8
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 2.9e-28 131.0 86 76.7
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.7e-23 114.0 125 55.2
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.0e-21 108.2 81 71.6
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 3.4e-21 107.5 84 67.9
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 4.6e-18 97.1 189 31.2
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 1.0e-17 95.9 243 31.7
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.9e-17 94.0 249 29.7
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 7.4e-16 89.7 230 28.7
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.8e-15 87.8 151 38.4
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 2.7e-10 71.2 63 65.1
QL09p051344 Quercus lobata HOM05D005604 ORTHO05D006745 1.4e-06 58.9 46 65.2


User provided reference genes

Program Settings